View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18348_low_3 (Length: 677)
Name: NF18348_low_3
Description: NF18348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18348_low_3 |
 | |
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| [»] scaffold0061 (1 HSPs) |
| | |
|
| [»] scaffold0057 (2 HSPs) |
| | |
|
| [»] scaffold0020 (1 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 579; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 11 - 661
Target Start/End: Complemental strand, 26147224 - 26146575
Alignment:
| Q |
11 |
cacagacagtccaaatctggtttggattaagcttccttgtgtgaatataaaccatatgactacaaacagaaataagatggtcaattacctttgttttata |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26147224 |
cacagacagtccaaatctggtttggattaagcttccttgtgtgaatataaaccatatgactacaaacagaaataagatggtcaattacctttgttttata |
26147125 |
T |
|
| Q |
111 |
ggtccacatagcttataaaagtctggaaaaccttgaagtctagcattttctcgaattgataacacatgcataatttcctggttaaacaaataaggatgtc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26147124 |
ggtccacatagcttataaaagtctggaaaaccttgaagtctagcattttctcgaattgataacacatgcataatttcctggttaaacaaataaggatgtc |
26147025 |
T |
|
| Q |
211 |
atctaaacattgaattttgcttcaataagtttagcaaggcctagagcttgggtgattggaagttttattgccatttcagtgggacacgattacccaagtt |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||| |
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|
| T |
26147024 |
atctaaacattgaattttgcttcaataagtttagcaaggcctatagcttgggtgattggaagttttatttccatttcggtgggacacgattgcccaagtt |
26146925 |
T |
|
| Q |
311 |
ctcaaattgagcttgatactccgacaccaaacctgttcgttgaagtttaaacagctcagcttggtgattggcgtaggtagagggtccaaatcgaagttcc |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26146924 |
ctcaaattgagcttgatactccgacaccaaacctgtttgttgaagtttaaacagctcagcttggtgattggcgtaggtagagggtccaaatcgaagttcc |
26146825 |
T |
|
| Q |
411 |
aaggccttcgt---gaaggaattccaatcaaacagttggtggttttgatgcatccacttaaaccaacttaaagcatgccctttcatataaaaggaggaca |
507 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
26146824 |
aaggccttagtgaagaaggaattccaatcaaacagttggtggttttgatgcatccacttaaaccaaattaaagcatgccctttcatataaaaggaggacg |
26146725 |
T |
|
| Q |
508 |
tggataagcgactttcaggtggtatttggtagaaggtaaaaaattgttcggcttaaaagagccattcaaaagggtatgtaccgttgaatgaatggtggta |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
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|
| T |
26146724 |
tggataagcgactttcaggtggtatttggtagaaggtaaaaaattgttcggcttaaaagagccattcaaaagggtatgtaccgt----cgaatggttcta |
26146629 |
T |
|
| Q |
608 |
gctcaagttttggggtccaaaatggggtggaaactgtgtgggaaatgaaggaaa |
661 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26146628 |
gctcaagttttggggtccaaaatggggtggaaactgtgtgggaaatgaaggaaa |
26146575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 475 - 661
Target Start/End: Complemental strand, 16237944 - 16237762
Alignment:
| Q |
475 |
ttaaagcatgccctttcatataaaaggaggacatggataagcgactttcaggtggtatttggtagaaggtaaaaaattgttcggcttaaaagagccattc |
574 |
Q |
| |
|
||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||| ||||| |||||||||||||| | |
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|
| T |
16237944 |
ttaaagcatcctctttcatataaaaggaggacatcaataagcgactttcaggtggtatttgctagaagataaaaaatagttcgacttaaaagagccatgc |
16237845 |
T |
|
| Q |
575 |
aaaagggtatgtaccgttgaatgaatggtggtagctcaagttttggggtccaaaatggggtggaaactgtgtgggaaatgaaggaaa |
661 |
Q |
| |
|
|||||||||| |||||| ||||||| |||||||||||||||||| |||||||||||| |||||||| | |||||||| |||| |
|
|
| T |
16237844 |
aaaagggtatttaccgt----caaatggtgctagctcaagttttggggttcaaaatggggtgaaaactgtgggtgaaatgaaagaaa |
16237762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 431 - 582
Target Start/End: Complemental strand, 71095 - 70944
Alignment:
| Q |
431 |
ccaatcaaacagttggtggttttgatgcatccacttaaaccaacttaaagcatgccctttcatataaaaggaggacatggataagcgactttcaggtggt |
530 |
Q |
| |
|
||||||||| ||||| || ||||||| |||||| |||||||||||||| |||| |||||||| || || || ||||||||||||||||| || ||||| |
|
|
| T |
71095 |
ccaatcaaaaagttgatgattttgatacatccatttaaaccaacttaaggcatctcctttcatgtagaatgacgacatggataagcgactctcgggtggg |
70996 |
T |
|
| Q |
531 |
atttggtagaaggtaaaaaattgttcggcttaaaagagccattcaaaagggt |
582 |
Q |
| |
|
|||||||| || || |||||||| || |||| || | |||||||| ||||| |
|
|
| T |
70995 |
atttggtaaaatgtgaaaaattgctccgcttggaataaccattcaagagggt |
70944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 384 - 499
Target Start/End: Complemental strand, 21325763 - 21325648
Alignment:
| Q |
384 |
taggtagagggtccaaatcgaagttccaaggccttcgtgaaggaattccaatcaaacagttggtggttttgatgcatccacttaaaccaacttaaagcat |
483 |
Q |
| |
|
||||||||||| |||||||| | |||||| | ||| | || |||||||||||||| |||||||||||||||| ||||||||| ||||||||| |||| |
|
|
| T |
21325763 |
taggtagagggaccaaatcgtaattccaatgtcttagcaaaagaattccaatcaaaaagttggtggttttgatacatccacttgtaccaacttagggcat |
21325664 |
T |
|
| Q |
484 |
gccctttcatataaaa |
499 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
21325663 |
cacctttcatataaaa |
21325648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 354 - 508
Target Start/End: Complemental strand, 8744831 - 8744677
Alignment:
| Q |
354 |
agtttaaacagctcagcttggtgattggcgtaggtagagggtccaaatcgaagttccaaggccttcgtgaaggaattccaatcaaacagttggtggtttt |
453 |
Q |
| |
|
|||||||||| || || ||||||||||| ||||| ||||| || || || ||||| | || || ||||||||| ||||||| || ||||||||||||| |
|
|
| T |
8744831 |
agtttaaacaattctgcctggtgattggcataggtggagggaccgaaacggagttcaagggattttgtgaaggaaatccaatcgaaaagttggtggtttt |
8744732 |
T |
|
| Q |
454 |
gatgcatccacttaaaccaacttaaagcatgccctttcatataaaaggaggacat |
508 |
Q |
| |
|
| | ||||||||| |||||||| | ||| | || ||||| ||||| |||||||| |
|
|
| T |
8744731 |
ggtacatccacttgaaccaactaagagcttcacccttcatgtaaaatgaggacat |
8744677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 171
Target Start/End: Complemental strand, 28216283 - 28216232
Alignment:
| Q |
120 |
agcttataaaagtctggaaaaccttgaagtctagcattttctcgaattgata |
171 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||| | ||||| |||| |
|
|
| T |
28216283 |
agcttataaaagtctggaaaaccttgtaatctagcatttccacgaatggata |
28216232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 171
Target Start/End: Complemental strand, 28227135 - 28227084
Alignment:
| Q |
120 |
agcttataaaagtctggaaaaccttgaagtctagcattttctcgaattgata |
171 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||| | ||||| |||| |
|
|
| T |
28227135 |
agcttataaaagtctggaaaaccttgtaatctagcatttccacgaatggata |
28227084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 354 - 508
Target Start/End: Original strand, 44506583 - 44506737
Alignment:
| Q |
354 |
agtttaaacagctcagcttggtgattggcgtaggtagagggtccaaatcgaagttccaaggccttcgtgaaggaattccaatcaaacagttggtggtttt |
453 |
Q |
| |
|
|||||||||| || || ||||||||||||||||| ||||| || || |||||||| | || || ||||||||| ||||||| || ||||||||||||| |
|
|
| T |
44506583 |
agtttaaacaattctgcctggtgattggcgtaggtggagggaccgaaacgaagttcaagggattttgtgaaggaaatccaatcgaaaagttggtggtttt |
44506682 |
T |
|
| Q |
454 |
gatgcatccacttaaaccaacttaaagcatgccctttcatataaaaggaggacat |
508 |
Q |
| |
|
| | ||||||||| |||||||| | ||| | || ||||| ||||| |||||||| |
|
|
| T |
44506683 |
ggtacatccacttgaaccaactaagagcttcacccttcatgtaaaatgaggacat |
44506737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 33848219 - 33848316
Alignment:
| Q |
64 |
atatgactacaaacagaaataagatggtcaa-ttacctttgttttataggtccacatagcttataaaagtctggaaaaccttgaagtctagcattttc |
160 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||| ||| | || |||||| |||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
33848219 |
atatgactacaaacagaaataagattacaaatttacctttctttaacagatccacaaagcttataaaagtctggaaaaccttgtaatctagcattttc |
33848316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 502
Target Start/End: Original strand, 22487916 - 22487977
Alignment:
| Q |
441 |
agttggtggttttgatgcatccacttaaaccaacttaaagcatgccctttcatataaaagga |
502 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||| ||||| || |||| ||||||||| |
|
|
| T |
22487916 |
agttggtggttttgatacatccacttgtaccaacttagagcatcacccttcacataaaagga |
22487977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 369 - 582
Target Start/End: Complemental strand, 11209 - 10996
Alignment:
| Q |
369 |
gcttggtgattggcgtaggtagagggtccaaatcgaagttccaaggccttcgtgaaggaattccaatcaaacagttggtggttttgatgcatccacttaa |
468 |
Q |
| |
|
||||||||||| || ||||| ||||||||||||| |||||||| || || |||||||| ||||||| ||| ||| |||||| |||||| |||| |
|
|
| T |
11209 |
gcttggtgattagcataggtggagggtccaaatctgagttccaaagctttagtgaaggagagccaatcatgaagtaggttattttgaaacatccatttaa |
11110 |
T |
|
| Q |
469 |
accaacttaaagcatgccctttcatataaaaggaggacatggataagcgactttcaggtggtatttggtagaaggtaaaaaattgttcggcttaaaagag |
568 |
Q |
| |
|
||||||| ||||| | ||||||||||| |||||||||||| || || ||||| || ||||||||||| |||||||||||| || | ||| || |
|
|
| T |
11109 |
accaactcaaagcttcgcctttcatatagaaggaggacatgtgtacacggctttccatagggatttggtagaaacaaaaaaattgttccgcctgaaatag |
11010 |
T |
|
| Q |
569 |
ccattcaaaagggt |
582 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
11009 |
ccattctaaagggt |
10996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 369 - 582
Target Start/End: Original strand, 15173 - 15386
Alignment:
| Q |
369 |
gcttggtgattggcgtaggtagagggtccaaatcgaagttccaaggccttcgtgaaggaattccaatcaaacagttggtggttttgatgcatccacttaa |
468 |
Q |
| |
|
||||||||||| || ||||| ||||||||||||| |||||||| || || |||||||| ||||||| ||| ||| |||||| |||||| |||| |
|
|
| T |
15173 |
gcttggtgattagcataggtggagggtccaaatctgagttccaaagctttagtgaaggagagccaatcatgaagtaggttattttgaaacatccatttaa |
15272 |
T |
|
| Q |
469 |
accaacttaaagcatgccctttcatataaaaggaggacatggataagcgactttcaggtggtatttggtagaaggtaaaaaattgttcggcttaaaagag |
568 |
Q |
| |
|
||||||| ||||| | ||||||||||| |||||||||||| || || ||||| || ||||||||||| |||||||||||| || | ||| || |
|
|
| T |
15273 |
accaactcaaagcttcgcctttcatatagaaggaggacatgtgtacacggctttccatagggatttggtagaaacaaaaaaattgttccgcctgaaatag |
15372 |
T |
|
| Q |
569 |
ccattcaaaagggt |
582 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
15373 |
ccattctaaagggt |
15386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 430 - 574
Target Start/End: Complemental strand, 3980 - 3836
Alignment:
| Q |
430 |
tccaatcaaacagttggtggttttgatgcatccacttaaaccaacttaaagcatgccctttcatataaaaggaggacatggataagcgactttcaggtgg |
529 |
Q |
| |
|
||||||| |||| |||| | ||||| | ||||||||||||||||| ||||||| || ||||| || || |||||||||| ||| ||||| || ||| |
|
|
| T |
3980 |
tccaatcgaacaattggcgattttggtacatccacttaaaccaacacaaagcatcgcccttcatgtagaaagaggacatgggtaaacgactctctactgg |
3881 |
T |
|
| Q |
530 |
tatttggtagaaggtaaaaaattgttcggcttaaaagagccattc |
574 |
Q |
| |
|
|||||||| || |||||||||||||| |||| ||| |||||||| |
|
|
| T |
3880 |
aatttggtaaaacgtaaaaaattgttccgcttgaaaaagccattc |
3836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 431 - 475
Target Start/End: Original strand, 6707901 - 6707945
Alignment:
| Q |
431 |
ccaatcaaacagttggtggttttgatgcatccacttaaaccaact |
475 |
Q |
| |
|
|||||| || |||||||||||||||| |||||||||| ||||||| |
|
|
| T |
6707901 |
ccaatcgaagagttggtggttttgatacatccacttataccaact |
6707945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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