View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18348_low_4 (Length: 671)
Name: NF18348_low_4
Description: NF18348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18348_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 239 - 561
Target Start/End: Original strand, 2059916 - 2060237
Alignment:
| Q |
239 |
tagccttaaaaagtttcattttctttgaagctattggaccagcctcacattgattgtttattcaattatctttccatctcattcagttgatgccatgcct |
338 |
Q |
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| T |
2059916 |
tagccttaaaaagtttcattttctttgaagctattggaccagcctcacattgattgtttattcaattatctttccatctcattcagttgatgccatgcct |
2060015 |
T |
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| Q |
339 |
gtcaatatcagtctaaactttgacaccgttttcccactacgtatgttaatggaacaatttaagtcgcctagggnnnnnnnnnncttccttacaataaagt |
438 |
Q |
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| T |
2060016 |
gtcaatatcagtctaaactttgacaccgttttcccactacgaatgttaatggaacaatttaagtcgcctaggg-tttttttttcttccttacaataaagt |
2060114 |
T |
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| Q |
439 |
tacgtagagataatgaatagacaccactttatcatattccataaacaataaaagggaaattatgttcaatcgttttcccaaaaatactctatcatatagt |
538 |
Q |
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| T |
2060115 |
tacgtagagataatgaatagacaccactttatcatattccataaacaataaaagggaaattatgttcaatcgttttcccaaaaatactctatcatatagc |
2060214 |
T |
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| Q |
539 |
ggataacctagcaaatatggtga |
561 |
Q |
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| T |
2060215 |
ggataacctagcaaatatggtga |
2060237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 43 - 211
Target Start/End: Original strand, 2059721 - 2059889
Alignment:
| Q |
43 |
ataattgttcactacgaatcttacatcttattaaatttcataacaaaaaactttaaaaatataatccatttatgtttacttaagatttgaagtgtgttca |
142 |
Q |
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| T |
2059721 |
ataattgttcactacgaatcttacatcgtattaaatttcataacaaaaaacttaaaaaatataatccatttatgtttacttaagatttgaagtgtgttca |
2059820 |
T |
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| Q |
143 |
tcttaaagtctgaaattcaactttctttgatgtcaattttaattaatggactaatttatagtattaaag |
211 |
Q |
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| T |
2059821 |
tcttaaagtctgaaattcaactttctttgatgtcaattttaattaatggactaatttatagtattaaag |
2059889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 590 - 651
Target Start/End: Original strand, 2060245 - 2060303
Alignment:
| Q |
590 |
actgtaccaaacacattagatactagataatttatttatagagatatttgataagttgggtt |
651 |
Q |
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| T |
2060245 |
actgtaccaaaaacattagatactagataatttaattatag---tacttgataagttgggtt |
2060303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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