View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18348_low_8 (Length: 402)

Name: NF18348_low_8
Description: NF18348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18348_low_8
NF18348_low_8
[»] chr5 (12 HSPs)
chr5 (12-323)||(25070195-25070506)
chr5 (12-323)||(25128170-25128481)
chr5 (25-197)||(25216905-25217083)
chr5 (25-197)||(25281060-25281238)
chr5 (103-197)||(25102645-25102739)
chr5 (103-197)||(25161739-25161833)
chr5 (200-303)||(25102773-25102876)
chr5 (200-303)||(25161867-25161970)
chr5 (215-261)||(25217152-25217198)
chr5 (215-261)||(25281307-25281353)
chr5 (17-74)||(25102552-25102610)
chr5 (17-74)||(25161646-25161704)
[»] chr7 (1 HSPs)
chr7 (17-74)||(30597234-30597291)
[»] chr4 (1 HSPs)
chr4 (17-77)||(52187809-52187869)
[»] chr3 (1 HSPs)
chr3 (23-70)||(8032355-8032402)
[»] chr2 (4 HSPs)
chr2 (103-142)||(7228396-7228435)
chr2 (17-67)||(43866611-43866661)
chr2 (19-80)||(38990086-38990147)
chr2 (15-79)||(7228296-7228360)


Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 12 - 323
Target Start/End: Original strand, 25070195 - 25070506
Alignment:
Q  12 tcatcagttcctgatttgttgacggttgagttccctaccttgtataacttgaagtcacttaaaatagaagcatcattgatacctagaaaaatagtggact 111  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25070195 tcattagttccggatttgttgacggttgagttccctaccttgtataacttgaagtcacttaaaatagaagcatcattaatacctagaaaaatagtggact 25070294  T
Q  112 ttttgcttcaaaatgtaccatcagcaaaggtcgacatctgacctcattaaggttaatgtcctttcaacttgcaaaacacaatttttgtttcccttggccc 211  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25070295 ttttgcttcaaaatgcaccatcagcaaaggtcgacatctgacctcattaaggtaaatgtcctttcaacttgcaaaacacaatttttgtttcccttggccc 25070394  T
Q  212 ctatttacatgcttgatagattgttgatcatattgtctaactcatttgaannnnnnncattatacatgtttgataaaatattaaattgatgagttctgga 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  25070395 ctatttacatgcttgatagattgttgatcatattgtctaactcatttgaatttttttcattatacatgtttgataaaatattaaattgatgagttctgga 25070494  T
Q  312 atcatctcatta 323  Q
    ||||||||||||    
T  25070495 atcatctcatta 25070506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 12 - 323
Target Start/End: Original strand, 25128170 - 25128481
Alignment:
Q  12 tcatcagttcctgatttgttgacggttgagttccctaccttgtataacttgaagtcacttaaaatagaagcatcattgatacctagaaaaatagtggact 111  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25128170 tcattagttccggatttgttgacggttgagttccctaccttgtataacttgaagtcacttaaaatagaagcatcattaatacctagaaaaatagtggact 25128269  T
Q  112 ttttgcttcaaaatgtaccatcagcaaaggtcgacatctgacctcattaaggttaatgtcctttcaacttgcaaaacacaatttttgtttcccttggccc 211  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25128270 ttttgcttcaaaatgcaccatcagcaaaggtcgacatctgacctcattaaggtaaatgtcctttcaacttgcaaaacacaatttttgtttcccttggccc 25128369  T
Q  212 ctatttacatgcttgatagattgttgatcatattgtctaactcatttgaannnnnnncattatacatgtttgataaaatattaaattgatgagttctgga 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  25128370 ctatttacatgcttgatagattgttgatcatattgtctaactcatttgaatttttttcattatacatgtttgataaaatattaaattgatgagttctgga 25128469  T
Q  312 atcatctcatta 323  Q
    ||||||||||||    
T  25128470 atcatctcatta 25128481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 25 - 197
Target Start/End: Original strand, 25216905 - 25217083
Alignment:
Q  25 atttgttgacggttgagttccctaccttgtataacttgaagtcacttaaaatagaa------gcatcattgatacctagaaaaatagtggactttttgct 118  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||| |||||      |  ||||  |||||||    | ||||||| ||||||||    
T  25216905 atttattgaaggttgagttccctaccttgtataacttgaagtcacttaaagtagaaatgggaggttcatccatacctaagggattagtggaatttttgct 25217004  T
Q  119 tcaaaatgtaccatcagcaaaggtcgacatctgacctcattaaggttaatgtcctttcaacttgcaaaacacaattttt 197  Q
    |||||||| ||||||||||||||| ||||||| ||||||||||||| ||||||||| ||| ||| ||||||||||||||    
T  25217005 tcaaaatgcaccatcagcaaaggttgacatcttacctcattaaggtaaatgtccttacaatttgtaaaacacaattttt 25217083  T

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Target: chr5; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 25 - 197
Target Start/End: Original strand, 25281060 - 25281238
Alignment:
Q  25 atttgttgacggttgagttccctaccttgtataacttgaagtcacttaaaatagaa------gcatcattgatacctagaaaaatagtggactttttgct 118  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||| |||||      |  ||||  |||||||    | ||||||| ||||||||    
T  25281060 atttattgaaggttgagttccctaccttgtataacttgaagtcacttaaagtagaaatgggaggttcatccatacctaagggattagtggaatttttgct 25281159  T
Q  119 tcaaaatgtaccatcagcaaaggtcgacatctgacctcattaaggttaatgtcctttcaacttgcaaaacacaattttt 197  Q
    |||||||| ||||||||||||||| ||||||| ||||||||||||| ||||||||| ||| ||| ||||||||||||||    
T  25281160 tcaaaatgcaccatcagcaaaggttgacatcttacctcattaaggtaaatgtccttacaatttgtaaaacacaattttt 25281238  T

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Target: chr5; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 103 - 197
Target Start/End: Original strand, 25102645 - 25102739
Alignment:
Q  103 tagtggactttttgcttcaaaatgtaccatcagcaaaggtcgacatctgacctcattaaggttaatgtcctttcaacttgcaaaacacaattttt 197  Q
    ||||||| |||||||||||| ||| ||||||||||||||| ||||||||||||||||||||| ||||||| | ||||||  ||||||||||||||    
T  25102645 tagtggaatttttgcttcaatatgcaccatcagcaaaggttgacatctgacctcattaaggtaaatgtccctccaacttttaaaacacaattttt 25102739  T

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Target: chr5; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 103 - 197
Target Start/End: Original strand, 25161739 - 25161833
Alignment:
Q  103 tagtggactttttgcttcaaaatgtaccatcagcaaaggtcgacatctgacctcattaaggttaatgtcctttcaacttgcaaaacacaattttt 197  Q
    ||||||| |||||||||||| ||| ||||||||||||||| ||||||||||||||||||||| ||||||| | ||||||  ||||||||||||||    
T  25161739 tagtggaatttttgcttcaatatgcaccatcagcaaaggttgacatctgacctcattaaggtaaatgtccctccaacttttaaaacacaattttt 25161833  T

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Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 200 - 303
Target Start/End: Original strand, 25102773 - 25102876
Alignment:
Q  200 ttcccttggcccctatttacatgcttgatagattgttgatcatattgtctaactcatttgaannnnnnncattatacatgtttgataaaatattaaattg 299  Q
    ||||||||| | | ||||||||| |||||||| ||||||| ||| |||||||||||||||||       | ||||||||||||| |||||| |||| |||    
T  25102773 ttcccttggtctccatttacatgtttgatagaatgttgattatactgtctaactcatttgaattattttctttatacatgtttggtaaaatgttaagttg 25102872  T
Q  300 atga 303  Q
    ||||    
T  25102873 atga 25102876  T

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Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 200 - 303
Target Start/End: Original strand, 25161867 - 25161970
Alignment:
Q  200 ttcccttggcccctatttacatgcttgatagattgttgatcatattgtctaactcatttgaannnnnnncattatacatgtttgataaaatattaaattg 299  Q
    ||||||||| | | ||||||||| |||||||| ||||||| ||| |||||||||||||||||       | ||||||||||||| |||||| |||| |||    
T  25161867 ttcccttggtctccatttacatgtttgatagaatgttgattatactgtctaactcatttgaattattttctttatacatgtttggtaaaatgttaagttg 25161966  T
Q  300 atga 303  Q
    ||||    
T  25161967 atga 25161970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 261
Target Start/End: Original strand, 25217152 - 25217198
Alignment:
Q  215 tttacatgcttgatagattgttgatcatattgtctaactcatttgaa 261  Q
    |||||||| |||||||| ||||||| |||||||||||||||||||||    
T  25217152 tttacatgtttgatagaatgttgattatattgtctaactcatttgaa 25217198  T

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Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 261
Target Start/End: Original strand, 25281307 - 25281353
Alignment:
Q  215 tttacatgcttgatagattgttgatcatattgtctaactcatttgaa 261  Q
    |||||||| |||||||| ||||||| |||||||||||||||||||||    
T  25281307 tttacatgtttgatagaatgttgattatattgtctaactcatttgaa 25281353  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 25102552 - 25102610
Alignment:
Q  17 agttcctgatttgttgacggttgagttccctaccttgtataac-ttgaagtcacttaaa 74  Q
    ||||||| |||| |||| |||||||||||  |||||||||||| |||||||||||||||    
T  25102552 agttcctaatttattgaaggttgagttcctgaccttgtataactttgaagtcacttaaa 25102610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 25161646 - 25161704
Alignment:
Q  17 agttcctgatttgttgacggttgagttccctaccttgtataac-ttgaagtcacttaaa 74  Q
    ||||||| |||| |||| |||||||||||  |||||||||||| |||||||||||||||    
T  25161646 agttcctaatttattgaaggttgagttcctgaccttgtataactttgaagtcacttaaa 25161704  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 30597291 - 30597234
Alignment:
Q  17 agttcctgatttgttgacggttgagttccctaccttgtataacttgaagtcacttaaa 74  Q
    |||||||||||| |||| ||||||||||| | |||||| ||||||||||| |||||||    
T  30597291 agttcctgatttattgaaggttgagttccattccttgtgtaacttgaagttacttaaa 30597234  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 52187809 - 52187869
Alignment:
Q  17 agttcctgatttgttgacggttgagttccctaccttgtataacttgaagtcacttaaaata 77  Q
    |||||||||||| |||| ||||||||||| | |||||| || |||||||||||| ||||||    
T  52187809 agttcctgatttattgaaggttgagttccattccttgtgtaccttgaagtcactgaaaata 52187869  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 8032402 - 8032355
Alignment:
Q  23 tgatttgttgacggttgagttccctaccttgtataacttgaagtcact 70  Q
    |||||| |||||||||||||||||| |||||  |||||||||||||||    
T  8032402 tgatttattgacggttgagttcccttccttgcgtaacttgaagtcact 8032355  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 103 - 142
Target Start/End: Original strand, 7228396 - 7228435
Alignment:
Q  103 tagtggactttttgcttcaaaatgtaccatcagcaaaggt 142  Q
    |||||||||||||||||||||||| |||||| ||||||||    
T  7228396 tagtggactttttgcttcaaaatgcaccatcggcaaaggt 7228435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 43866661 - 43866611
Alignment:
Q  17 agttcctgatttgttgacggttgagttccctaccttgtataacttgaagtc 67  Q
    ||||| |||||| |||| ||||||||||||| |||||| ||||||||||||    
T  43866661 agttcgtgatttattgaaggttgagttcccttccttgtttaacttgaagtc 43866611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 38990086 - 38990147
Alignment:
Q  19 ttcctgatttgttgacggttgagttccctaccttgtataacttgaagtcacttaaaatagaa 80  Q
    |||||||||| |||| || |||| ||| | ||||||||||||||||||| || |||||||||    
T  38990086 ttcctgatttattgaaggctgagctccatcccttgtataacttgaagtccctgaaaatagaa 38990147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 7228296 - 7228360
Alignment:
Q  15 tcagttcctgatttgttgacggttgagttccctaccttgtataacttgaagtcacttaaaataga 79  Q
    |||||||| ||||| ||||   ||||||||||| |||||||||||||||| ||||| || |||||    
T  7228296 tcagttccggatttattgaaccttgagttcccttccttgtataacttgaaatcactgaagataga 7228360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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