View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18349_high_4 (Length: 463)
Name: NF18349_high_4
Description: NF18349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18349_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 7 - 448
Target Start/End: Complemental strand, 30757685 - 30757244
Alignment:
| Q |
7 |
gtgagaagaaacctacacatgctcggaagcaaatgactctgaaatatgttgaaaagaaagatcctgatggtataggttcttctaaagcttttgcagcacc |
106 |
Q |
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| T |
30757685 |
gtgagaagaaacctacacatgctcggaagcaaatgactctgaaatatgttgaaaagaacgatcatgatggtataggttcttctaaagcttttgcagcgcc |
30757586 |
T |
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| Q |
107 |
aattactaataaggcggttattgccattgtgaatgaagagcatatccctgccacaatttcattcggtactgatgacacttcaaatattcaggaaaagctt |
206 |
Q |
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| T |
30757585 |
aattactaataaggcggttattgccattgtgaatgaagagcatatccctgccacaatttcattcggtactgatgacacttcaaatattcaggaaaagctt |
30757486 |
T |
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| Q |
207 |
catggtgagctgattaataccgaagagctcattgttgctaatgatcatccaacaagtcatgctgaaccccctgttacttctaacccccacacttcttaat |
306 |
Q |
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| T |
30757485 |
catggtgagctgattaataccgaagagctcatcgttactaatgatcatccaacaagtcatgttgaaccccctgttacttctaacccccacacttcttaat |
30757386 |
T |
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| Q |
307 |
gcagataaggtttttaataatgattctcaagttaaaaatgccgaacaagttgcttatactgttatagcagaaaaactcggcaaaagtgtccactacactg |
406 |
Q |
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| T |
30757385 |
gcagataaggttgttaataatgattctcaagttaaaaatgccgaacaagttgcttatactgttatagcataaaaactcggcacaagtgtccactacactg |
30757286 |
T |
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| Q |
407 |
gctcagattgcgtggaaccctaaatcaaacacttcttttcat |
448 |
Q |
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| T |
30757285 |
gctcagattgcgtggaaccctaaatcaaacacttattttcat |
30757244 |
T |
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