View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18349_high_5 (Length: 422)
Name: NF18349_high_5
Description: NF18349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18349_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 7 - 404
Target Start/End: Complemental strand, 2879382 - 2878985
Alignment:
| Q |
7 |
atacaatcaggatgtagtgttattacctcagcttgatccgaaacattctcctgaggatcaactttaattttcactaaataccccgatttggtgagccgat |
106 |
Q |
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| T |
2879382 |
atacaaccaggatgtagtgttattacctcagcttgatccgaaacattctcctgaggatcaactttaattttcactaaataccccgacttggtgagccgat |
2879283 |
T |
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| Q |
107 |
aaatagaccctttaaaataaattgannnnnnnatccaatcagactcgtaaatgtattctggcaaactaatattcaatgtagtccaattaccagtcacgga |
206 |
Q |
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| T |
2879282 |
aaatagaccctttaaaataaattgatttttttatccaatcagactcgtaaatgtaatctggcaaactaatattcaatgtcgtccaattaccagtcacgga |
2879183 |
T |
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| Q |
207 |
ggagaaaatgttcacatgacgaagaccctgaaaacgcgcaatcttgaaaaaccaagattctgcagggtcatatgcgagagcagcatatgaataccctcca |
306 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
2879182 |
ggagaaaatgttcacatgacgaagaccctgaaaacgcacaatcttgaaaaaccaagattctgcagggtcatatgccagagcagcatatgaatacccacca |
2879083 |
T |
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| Q |
307 |
gaggtttgtcctatgggcttcataacagtcacacattgttttgtgactggattcaggacatagtaataatagacaccacgcaagatgttggtagcctc |
404 |
Q |
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| T |
2879082 |
gaggtttgtcctatgggcttcataacagtcacacattgttttgtgactggattcaggacatagtaataatagacaccacgcaagatgttggtagcctc |
2878985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 2089949 - 2090031
Alignment:
| Q |
4 |
aaaatacaatcaggatgtagtgttattacctcagcttgatccgaaacattctcctgaggatcaactttaattttcactaaata |
86 |
Q |
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| T |
2089949 |
aaaacacaatcaggatgaagtgttattatctcagcttgattcgaggcattctcttgaggatcaactttaattttcaataaata |
2090031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 205 - 388
Target Start/End: Original strand, 2090153 - 2090336
Alignment:
| Q |
205 |
gaggagaaaatgttcacatgacgaagaccctgaaaacgcgcaatcttgaaaaaccaagattctgcagggtcatatgcgagagcagcatatgaataccctc |
304 |
Q |
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||||||||||| || | ||| | | || |||||||| | |||||||||| ||||||||||||| |||||||||| | |||||||||||||||| |||| |
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| T |
2090153 |
gaggagaaaatattaatatggccatgatcctgaaaatgtacaatcttgaagaaccaagattctgaagggtcatataccagagcagcatatgaatttcctc |
2090252 |
T |
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| Q |
305 |
cagaggtttgtcctatgggcttcataacagtcacacattgttttgtgactggattcaggacatagtaataatagacaccacgca |
388 |
Q |
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| T |
2090253 |
caaaaaattgtccagaaggcttcaaaatagccacacattgttttcttataggattcatgacatagtagtggtagacaccacgca |
2090336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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