View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18349_low_1 (Length: 916)
Name: NF18349_low_1
Description: NF18349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18349_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 792; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 792; E-Value: 0
Query Start/End: Original strand, 1 - 836
Target Start/End: Complemental strand, 40797463 - 40796629
Alignment:
| Q |
1 |
tagcccttatattgaacaattaactcaaatgtagaattcatggatacatcaaactgtgtagcatgtgctatgctggcgatgttatttaacgtaccacatt |
100 |
Q |
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| T |
40797463 |
tagccctgatattgaacaatgaactcaaatgtagaattcatggatacatcaaactgtgtagcatgtgctatgctggcgatgttatttaacgtaccacgtt |
40797364 |
T |
|
| Q |
101 |
actaccctcatttattcttaaaatctactctctaaatccttcaagatcactgcataagttgataaatgttttgttaaccacaaacttggaggttaaacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40797363 |
actaccctcatttattcttaaaatctactctctaaatccttcaagatcactgcataagttgataaatgttttgtcaaccacaaacttggaggttaaacat |
40797264 |
T |
|
| Q |
201 |
ctcaatgaacttcaaaattaaaaacaaatttcatgtaaactttcaaacgccaaagtatcgagtaaagaacatggtattggtattggaaacaatgagcaga |
300 |
Q |
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| T |
40797263 |
c-caatgaacttcaaaattaaaaacaaatttcatgtaaactttcaaacgccaaagtatcgagtaaagaacatggtattggtattggaaacaatgagcaga |
40797165 |
T |
|
| Q |
301 |
attttaatagtcctaaagtaaattttcactagtcttcactcatcagtgcgcatatccaaattgaatgaattgtatgaaacagaaacaaaggcccttgtgc |
400 |
Q |
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| T |
40797164 |
attttaatagtcctaaagtaaattttcactagtcttcactcatcagtgcgcatatccaaattgaatgaattgtatgaaacagaaacaaaggcccttgtgc |
40797065 |
T |
|
| Q |
401 |
ttctaatgacaattaaaaacatatctatgcgccaaggtttacaaccctctttgaatatcacattgtccactctatggtttagacttagagtgaatcaaca |
500 |
Q |
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| T |
40797064 |
ttctaatgacaattaaaaacatatctatgcggcaaggtatacaaccctctttgaatatcacattgtccactctatggtttagacttagagtgaatcaaca |
40796965 |
T |
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| Q |
501 |
atagcccaattcttattcaacacagtacaaagtaaaactacagtggtttaatcttcaattccatcgaaaagtagccagcattttagaacttcaagcaatt |
600 |
Q |
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| T |
40796964 |
atagcccaattcttattcaacacagtacaaagtaaaaccacagtggtttaatcttcaattccatcgaaaagtagccagcattttagaacttcaagcaatt |
40796865 |
T |
|
| Q |
601 |
tgcccaaccttgaaacctatagattaaactcaatataactaaaagattatcaacattatagttcctgtcgtggtcctattgctatcacaaaagaaaacaa |
700 |
Q |
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| T |
40796864 |
tgcccaaccttgaaacctatagattaaactcaatataattaaaagattatcaacattatagttcctgtcgtggtcctattgctatcacaaaagaaaacaa |
40796765 |
T |
|
| Q |
701 |
cgccctaaaagaatgaaagcacatgacaccagaatacaaaacaacaaagactggtaggcttagagaggatacatacatgcttataggctatagcactctc |
800 |
Q |
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| T |
40796764 |
cgccctaaaagaatgaaagcacatgacaccagaatacaaaacaacaaagactggtaggcttagagaggatacatacatgcttataggctatagcactctc |
40796665 |
T |
|
| Q |
801 |
cctcatgtaagcagacacggaactcggtgcaatttg |
836 |
Q |
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| T |
40796664 |
cctcatgtaagcagacacagaactcggtgcaatttg |
40796629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 833 - 898
Target Start/End: Complemental strand, 40796587 - 40796522
Alignment:
| Q |
833 |
tttgacaaattggagctttgtaaagagaataaacccaaacctgaatccggcttaatcacttaacag |
898 |
Q |
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| T |
40796587 |
tttgacaaattggagctttgtaaagagaataaacccaaacctgaatccggcttaatcacttaacag |
40796522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 597 - 748
Target Start/End: Complemental strand, 18307703 - 18307559
Alignment:
| Q |
597 |
aatttgcccaaccttgaaacctatagattaaactcaatataactaaaagattatcaacattatagttcctgtcgtggtcctattgctatcac--aaaaga |
694 |
Q |
| |
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|||||||||||| || |||| |||||||||| |||||||||| |||||||| || |||||||| | |||||||||||||||| |||||| |
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| T |
18307703 |
aatttgcccaacgtttaaacatatagattaagctcaatataattaaaagatgat---------agttcctggcagggtcctattgctatcaatgaaaaga |
18307613 |
T |
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| Q |
695 |
aaacaacgccctaaaagaatgaaagcacatgacaccagaatacaaaacaacaaa |
748 |
Q |
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| T |
18307612 |
aaacaatgccctaaagtaatgaaagcacatgacaccgaaatacaaaacaacaaa |
18307559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 672 - 748
Target Start/End: Original strand, 783274 - 783351
Alignment:
| Q |
672 |
ggtcctattgctatcacaaaagaaaacaacgccctaaaagaatgaaagcacatgac-accagaatacaaaacaacaaa |
748 |
Q |
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|||||||||||||||||||| |||||||||||| ||||||||||||||||||||| || | |||||||||||||||| |
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| T |
783274 |
ggtcctattgctatcacaaaggaaaacaacgccggaaaagaatgaaagcacatgacaacgaaaatacaaaacaacaaa |
783351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 343 - 430
Target Start/End: Original strand, 8621058 - 8621144
Alignment:
| Q |
343 |
tcagtgcgcatatccaaattgaatgaattgtatgaaacagaaacaaaggcccttgtgcttctaatgacaattaaaaacatatctatgc |
430 |
Q |
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||||||| || |||||| |||||||||||||||||||||| ||| || ||||| || ||| ||| |||||||||||||||||||||| |
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| T |
8621058 |
tcagtgcacacatccaagttgaatgaattgtatgaaacag-aaccgagccccttctgattcgaataacaattaaaaacatatctatgc |
8621144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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