View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18349_low_10 (Length: 329)
Name: NF18349_low_10
Description: NF18349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18349_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 318
Target Start/End: Complemental strand, 40536829 - 40536530
Alignment:
| Q |
19 |
aaagataagtcacgccaaattgtcctcttcctaattctttcccaagtgtgtaaatttgtttcacatcttcaaattgtttacctagaattgtgtttgtatc |
118 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40536829 |
aaaggtaagtcacgccaaattgtcctcttcctaattctttcccaagtgtgtaaatttgtttcacatcttcaaattgtttacctggaattgtgtttgtatc |
40536730 |
T |
|
| Q |
119 |
tgatcttttaacagttggttttggacttggtgcatgtttatctggtaattggtaaggttgttgaaaagggggtttcgattgcttcacaaatggttcatga |
218 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
40536729 |
tgaccttttaacagttggttttggacttggtgcatgtttatctggtaattggtaaggttgttgaaaagggggttttgattgcttcacaaatggttcatga |
40536630 |
T |
|
| Q |
219 |
ttcttgttattatgatcgtagcagtgattgtgattgggatttttattttgattgtgcttaccagaaacaccaatatgtctatgttttggttctgattctt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
40536629 |
ttcttgttattatgatcgtagcagtgattgtgattgggatttttattttgattgtgcttaccagaaacaccaacatgtctatgttttggttctaattctt |
40536530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 40531864 - 40531579
Alignment:
| Q |
19 |
aaagataagtcacgccaaattgtcctcttcctaattctttcccaagtgtgtaaatttgtttcacatcttcaaattgtttacctagaattgtgtttgtatc |
118 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
40531864 |
aaagataagtcacaccaaattgtcctcttcctaattctttcccaagtgtgtaaatttgtttcacatcttcaaattgtttaccaagaattgcgtttgtatt |
40531765 |
T |
|
| Q |
119 |
tgatcttttaacagttggttttggactt---ggtgcatgtttatctggtaattggtaaggttgttgaaaagggggtttcgattgcttcacaaatggttca |
215 |
Q |
| |
|
|| ||||| |||| |||||||||||||| || |||||||| | |||| ||||||||||||||||| |||||| ||| ||||| |||||| | |||||| |
|
|
| T |
40531764 |
tggtctttgaacaattggttttggacttcggggggcatgtttgtttggtgattggtaaggttgttgagaaggggtttttgattgattcacataaggttca |
40531665 |
T |
|
| Q |
216 |
tgattcttgttattatgatcgtagcagtgattgtgattgggatttttattttgattgtgcttaccagaaacaccaatatgtctatg |
301 |
Q |
| |
|
|||||||||| ||| |||| | |||||||||||| |||| | ||| |||||||| ||||||||||||||| |||||||| |
|
|
| T |
40531664 |
tgattcttgtgattgtgattatgattgtgattgtgattatgattatgattatgattgtgaataccagaaacaccaacgtgtctatg |
40531579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 23 - 234
Target Start/End: Complemental strand, 19430867 - 19430656
Alignment:
| Q |
23 |
ataagtcacgccaaattgtcctcttcctaattctttcccaagtgtgtaaatttgtttcacatcttcaaattgtttacctagaattgtgtttgtatctgat |
122 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||| |
|
|
| T |
19430867 |
ataagtcacaccaaattgccctcttcctaattctttcccaagtgtgtaaatttgtttcacatcttcaaattgtttaccaagaattgtttttgtatttgat |
19430768 |
T |
|
| Q |
123 |
cttttaacagttggttttggacttggtgcatgtttatctggtaattggtaaggttgttgaaaagggggtttcgattgcttcacaaatggttcatgattct |
222 |
Q |
| |
|
|||| | || |||||||||||||||| | |||||| | |||| |||||||||||||||||||||||| ||| ||||| |||||| | ||||||||||||| |
|
|
| T |
19430767 |
ctttgagcaattggttttggacttggggtatgtttgtttggtgattggtaaggttgttgaaaaggggtttttgattgattcacataaggttcatgattct |
19430668 |
T |
|
| Q |
223 |
tgttattatgat |
234 |
Q |
| |
|
||| ||| |||| |
|
|
| T |
19430667 |
tgtgattgtgat |
19430656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 301
Target Start/End: Complemental strand, 19430666 - 19430607
Alignment:
| Q |
242 |
gtgattgtgattgggatttttattttgattgtgcttaccagaaacaccaatatgtctatg |
301 |
Q |
| |
|
||||||||||||| |||| | ||| ||||||||| ||| ||||||||||| ||||||||| |
|
|
| T |
19430666 |
gtgattgtgattgtgattgtgattatgattgtgcatacaagaaacaccaacatgtctatg |
19430607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 8e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 21 - 234
Target Start/End: Complemental strand, 19149811 - 19149598
Alignment:
| Q |
21 |
agataagtcacgccaaattgtcctcttcctaattctttcccaagtgtgtaaatttgtttcacatcttcaaattgtttacctagaattgtgtttgtatctg |
120 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||| || |
|
|
| T |
19149811 |
agataagtcacaccaaattgccctcttcctaattctttcccaactgtgtaaatttgtttcacatcttcaaattatttactaagaattgtgtttgtatttg |
19149712 |
T |
|
| Q |
121 |
atcttttaacagttggttttggacttggtgcatgtttatctggtaattggtaaggttgttgaaaagggggtttcgattgcttcacaaatggttcatgatt |
220 |
Q |
| |
|
|||| | | || |||||||||||||||| | |||||| | |||| |||||||||||||||||||||||| ||| ||||| || ||| | ||||||||||| |
|
|
| T |
19149711 |
atctctgagcaattggttttggacttggggtatgtttgtttggtgattggtaaggttgttgaaaaggggtttttgattgatttacataaggttcatgatt |
19149612 |
T |
|
| Q |
221 |
cttgttattatgat |
234 |
Q |
| |
|
|||| ||| |||| |
|
|
| T |
19149611 |
tttgtgattgtgat |
19149598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 20501167 - 20501115
Alignment:
| Q |
36 |
aattgtcctcttcctaattctttcccaagtgtgtaaatttgtttcacatcttc |
88 |
Q |
| |
|
||||| ||||| ||||||||||| || |||||||| | ||||||||||||||| |
|
|
| T |
20501167 |
aattggcctctacctaattctttacctagtgtgtagaattgtttcacatcttc |
20501115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University