View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18349_low_11 (Length: 329)
Name: NF18349_low_11
Description: NF18349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18349_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 11 - 313
Target Start/End: Original strand, 34043763 - 34044064
Alignment:
| Q |
11 |
ttatactaattattgaagctgtgattggtttttccctaagagatgatggaaaagaaacatttgggttcctaaaactaaataaatttgtattccaatgact |
110 |
Q |
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| T |
34043763 |
ttatactaattattgaagctgtggttggtttttccctaagagacgatggaaaagaaacatttgggttcctaaaactaaataaatttgt-ttccaatgact |
34043861 |
T |
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| Q |
111 |
atgttatagagcattgtttttaaattcactaaatgaactcactggttgcacagagggacatgaatgtgaggataacccctccgatggtaatgagaatgga |
210 |
Q |
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| T |
34043862 |
atgttatagagcattgtttttaaattcactaaatgaactcactggttgcacagagggacatgaatgtgaggataactcctccgatggtaatgagaatgga |
34043961 |
T |
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| Q |
211 |
gcttctcatcctccaagaacttcaatgggcaatgagatcggtgactgccttctgctttctgaaccactattacccttatttcaaaaaattctgtgatttt |
310 |
Q |
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| T |
34043962 |
gcttctcattctccaagaacttcaatgggcaatgagatcggtgactgccttctgctttctgaaccactattacccttatttcaaaaaattctgtggtttt |
34044061 |
T |
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| Q |
311 |
aaa |
313 |
Q |
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| T |
34044062 |
aaa |
34044064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 29 - 313
Target Start/End: Complemental strand, 4045739 - 4045466
Alignment:
| Q |
29 |
ctgtgattggtttttccctaagagatgatggaaaagaaacatttgggttcctaaaactaaataaatttgtattccaatgactatgttatagagcattgtt |
128 |
Q |
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| T |
4045739 |
ctgtgactggtttttcgctaagagacgatggaaaagaaacatttcggttcctaaaactaaataaatttatattccaat-----------agagcattgat |
4045651 |
T |
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| Q |
129 |
tttaaattcactaaatgaactcactggttgcacagagggacatgaatgtgaggataacccctccgatggtaatgagaatggagcttctcatcctccaaga |
228 |
Q |
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| T |
4045650 |
tttaaattcactaaatgaacttactggttgcacagagggacatgaatgtgaggataactccgccgatggtaatgagaatggagcttctcattctccaaga |
4045551 |
T |
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| Q |
229 |
acttcaatgggcaatgagatcggtgactgccttctgctttctgaaccactattacccttatttcaaaaaattctgtgattttaaa |
313 |
Q |
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| T |
4045550 |
acttcaattgccaatgagatcagtgactgccttctgctttctgaactactattacccttatttcaaaaaattctgtggttttaaa |
4045466 |
T |
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