View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18349_low_2 (Length: 896)

Name: NF18349_low_2
Description: NF18349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18349_low_2
NF18349_low_2
[»] chr6 (19 HSPs)
chr6 (12-883)||(896379-897250)
chr6 (310-641)||(1192749-1193073)
chr6 (310-641)||(1181825-1182145)
chr6 (641-796)||(1182299-1182454)
chr6 (398-580)||(1187101-1187279)
chr6 (158-300)||(1193133-1193275)
chr6 (156-276)||(1182207-1182330)
chr6 (157-258)||(1237479-1237580)
chr6 (65-139)||(1182389-1182464)
chr6 (418-580)||(1197331-1197492)
chr6 (156-233)||(793878-793956)
chr6 (12-65)||(1237201-1237254)
chr6 (669-798)||(1237376-1237511)
chr6 (12-65)||(1193486-1193539)
chr6 (193-247)||(1176683-1176737)
chr6 (12-65)||(1182508-1182561)
chr6 (739-799)||(1193243-1193303)
chr6 (95-140)||(1237368-1237414)
chr6 (754-795)||(793867-793908)
[»] chr4 (5 HSPs)
chr4 (310-641)||(10203224-10203547)
chr4 (158-263)||(10203758-10203863)
chr4 (12-65)||(12857204-12857257)
chr4 (739-799)||(10203831-10203891)
chr4 (418-483)||(49611893-49611958)
[»] chr8 (8 HSPs)
chr8 (418-500)||(5171567-5171649)
chr8 (421-486)||(1795823-1795888)
chr8 (425-486)||(5185121-5185182)
chr8 (421-486)||(5195115-5195180)
chr8 (418-486)||(5207113-5207181)
chr8 (440-486)||(5177679-5177725)
chr8 (440-486)||(5198925-5198971)
chr8 (440-486)||(6231631-6231677)
[»] chr7 (4 HSPs)
chr7 (425-486)||(5178813-5178874)
chr7 (418-557)||(8306682-8306820)
chr7 (22-65)||(20257183-20257226)
chr7 (534-606)||(8551885-8551955)
[»] scaffold0302 (1 HSPs)
scaffold0302 (12-65)||(19741-19794)


Alignment Details
Target: chr6 (Bit Score: 835; Significance: 0; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 835; E-Value: 0
Query Start/End: Original strand, 12 - 883
Target Start/End: Complemental strand, 897250 - 896379
Alignment:
Q  12 tcatcacctaataacacaccagagcactaccaataacaaatcttaggcctaaaatcaaggactccagcatctcatccaaaaccccatttgtactcaatat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  897250 tcatcacctaataacacaccagagcactaccaataacaaatcttaggcctaaaatcaaggactccagcatctcatccaaaaccccatttgtactcaatat 897151  T
Q  112 gcaataacatatcctaagtattcaatatgctcactagagagcacttatcacattttcttaaccacatactcattagagagcaagtaaaaaatttctaaga 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  897150 gcaataacatatcctaagtattcaatatgctcactagagagcacttatcacattttcttaaccacatactcattagagagcaagtaaaaaatttctaaga 897051  T
Q  212 aaccatatacatccacaatgcaacaaagaaggcacaatactgttttttataagtgttggaacaaaatacttgtgagttagaacaaaatatctattgtcat 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  897050 aaccatatacatccacaatgcaacaaagaaggcacaatactgttttttataagtgttggaacaaaatacttgtgagttagaacaaaatatctattgtcat 896951  T
Q  312 atcaaacttctaaacatcattaatattctagactgaaggtaatatttgtttgatcttcataagctggtgcataagctggcgataaatctaaaattgtgtt 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  896950 atcaaacttctaaacatcattaatattctagactgaaggtaatatttgtgtgatcttcataagctggtgcataagctggcgatgaatctaaaattgtgtt 896851  T
Q  412 aaaacaaacattctcatcaatctccttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgctgcaaaagcaa 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  896850 aaaacaaacattctcatcaatctccttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgctgcaaaagcaa 896751  T
Q  512 tcgttcnnnnnnncccattagcgtctcatagaaaaactgtagttttagatgataaacaaaatagagttatacaactcacaagctacacataacataacat 611  Q
    ||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  896750 tcgttctttttttcccattagcgtctcatagaaaaactgtagttttagatgataaacaaaatagagttatacaactcacaagctacacataacataacat 896651  T
Q  612 taattataaacattttggagttaaatgcaccatcatctcatccaaaaccccatttctactcaatatgcaataacaatatcctaagtattcaatctaccct 711  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  896650 taattataaatattttggagttaaatgcaccatcatctcatccaaaaccccatttgtactcaatatgcaataacaatatcctaagtattcaatctaccct 896551  T
Q  712 atatcaataaatctcatcacaagtataatactcattagagaacacttatcactttatctcattttcttaaccaaatactcattagagacgggtcttcaaa 811  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  896550 atatcaataaatctcatcacaagtataatactcattagagaacacttatcactttatctcattttcttaaccaaatactcattagagacgggtcttcaaa 896451  T
Q  812 tctcagtatttcaaactaaaccaaacatcctaaaaccctgactcatcattataccgtttcatagaataatat 883  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  896450 tctcagtatttcaaactaaaccaaacatcctaaaaccctgactcatcattataccgtttcatagaataatat 896379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 182; E-Value: 6e-98
Query Start/End: Original strand, 310 - 641
Target Start/End: Complemental strand, 1193073 - 1192749
Alignment:
Q  310 atatcaaacttctaaacatcattaatattctagactgaaggtaatatttgtttgatcttcataagctggtgcataagctggcgataaatctaaaattgtg 409  Q
    |||||||||||||||||| |||||| ||||||| |||||||||||||||||| ||| |||| |  |||||||||||||||||||| ||||||||||||||    
T  1193073 atatcaaacttctaaacaacattaaaattctagcctgaaggtaatatttgttcgatgttcaaattctggtgcataagctggcgatgaatctaaaattgtg 1192974  T
Q  410 ttaaaacaaacattctcatcaatctccttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgctgcaaaagc 509  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||    
T  1192973 ttaaaacaaacattctcatcaatcttcttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaa---tgcaaaagc 1192877  T
Q  510 aatcgt--tcnnnnnnncccattagcgtctcatagaaaaactgtagttttagatgataaac-aaaatagagttatacaactcacaagctacacataacat 606  Q
    ||| ||  ||       ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||  || ||||||||||| ||     ||||    
T  1192876 aattgttctctttttttcccattagcgtctcatacaaaaactgtagttttagatgataaacaaaaatagagt--tagaactcacaagccac-----acat 1192784  T
Q  607 aacattaattataaacattttggagttaaatgcac 641  Q
    ||||||||||||||| |||||  ||||||||||||    
T  1192783 aacattaattataaatattttttagttaaatgcac 1192749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 177; E-Value: 6e-95
Query Start/End: Original strand, 310 - 641
Target Start/End: Complemental strand, 1182145 - 1181825
Alignment:
Q  310 atatcaaacttctaaacatcattaatattctagactgaaggtaatatttgtttgatcttcataagctggtgcataagctggcgataaatctaaaattgtg 409  Q
    |||||||||||||||||| |||||| ||||||| |||||||||||||||||||||| | || |   ||||||||||||||||||| ||||||||||||||    
T  1182145 atatcaaacttctaaacaacattaaaattctagcctgaaggtaatatttgtttgatgtgcaaattttggtgcataagctggcgatgaatctaaaattgtg 1182046  T
Q  410 ttaaaacaaacattctcatcaatctccttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgctgcaaaagc 509  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||   |||||||||    
T  1182045 ttaaaacaaacattctcatcaatcttcttagagcttatgactttcacatccttcaagtcatgccaccaacacttaatttcagcagaaa---tgcaaaagc 1181949  T
Q  510 aatcgttcnnnnnnncccattagcgtctcatagaaaaactgtagttttagatgataaacaaaatagagttatacaactcacaagctacacataacataac 609  Q
    ||||| ||       | |||||||||||||||||||| ||| |||||||||||||||||||||||||||   | |||||||||||  |||||   |||||    
T  1181948 aatcg-tctttttttctcattagcgtctcatagaaaatctgcagttttagatgataaacaaaatagagt--cagaactcacaagc--cacat---ataac 1181857  T
Q  610 attaattataaacattttggagttaaatgcac 641  Q
    ||||||||||||||||||||||| ||||||||    
T  1181856 attaattataaacattttggagtaaaatgcac 1181825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 641 - 796
Target Start/End: Complemental strand, 1182454 - 1182299
Alignment:
Q  641 ccatcatctcatccaaaaccccatttctactcaatatgcaataacaatatcctaagtattcaatctaccctatatcaataaatctcatcacaagtataat 740  Q
    |||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  1182454 ccattatctgatccaaaaccccatttgtactcaatatgcaataacaatatcctaagtattcaatataccatatatcaataaatctcatcacaagtataat 1182355  T
Q  741 actcattagagaacacttatcactttatctcattttcttaaccaaatactcattag 796  Q
    ||| |||||||| |||||||||||||||| |||||||||||||| ||| |||||||    
T  1182354 acttattagagagcacttatcactttatcacattttcttaaccacatattcattag 1182299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 398 - 580
Target Start/End: Complemental strand, 1187279 - 1187101
Alignment:
Q  398 tctaaaattgtgttaaaacaaacattctcatcaatctccttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaa 497  Q
    |||||||| || ||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||| || | || |||||    
T  1187279 tctaaaatggtcttaaaacaaacattctcatcaatcttcatagagcttgtgactttcacatccttcaagccatgccaccaacacttcgtattagaagaaa 1187180  T
Q  498 tgctgcaaaagcaatcgttcnnnnnnncccattagcgtctcatagaaaaactgtagttttagatgataaacaaaatagagtta 580  Q
       ||||||||||||||  |       | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1187179 ---tgcaaaagcaatcg-cctttttttctcattagcgtctcatagaaaaattgtagttttagatgataaacaaaatagagtta 1187101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 158 - 300
Target Start/End: Complemental strand, 1193275 - 1193133
Alignment:
Q  158 atcacattttcttaaccacatactcattagagagcaagtaaaaaatttctaagaaaccatatacatccacaatgcaacaaagaaggcacaatactgtttt 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||| |||| || |||||| |||||||||||| ||||||  |    
T  1193275 atcacattttcttaaccacatactcattagagagcaagtaaaaaaattcttagaaatcatattcatctacgatgcaataaagaaggcacattactgtaat 1193176  T
Q  258 ttataagtgttggaacaaaatacttgtgagttagaacaaaata 300  Q
    |||||||||||||||||||||||||| || || ||||||||||    
T  1193175 ttataagtgttggaacaaaatacttgggacttggaacaaaata 1193133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 156 - 276
Target Start/End: Complemental strand, 1182330 - 1182207
Alignment:
Q  156 ttatcacattttcttaaccacatactcattag---agagcaagtaaaaaatttctaagaaaccatatacatccacaatgcaacaaagaaggcacaatact 252  Q
    |||||||||||||||||||||||| |||||||   ||||||||||||||| |||| |||||||||||||||||||||| ||| |||||||||||| |||     
T  1182330 ttatcacattttcttaaccacatattcattagtagagagcaagtaaaaaaattcttagaaaccatatacatccacaatacaataaagaaggcacagtacg 1182231  T
Q  253 gttttttataagtgttggaacaaa 276  Q
    || |||||||||||||||||||||    
T  1182230 gtattttataagtgttggaacaaa 1182207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 157 - 258
Target Start/End: Original strand, 1237479 - 1237580
Alignment:
Q  157 tatcacattttcttaaccacatactcattagagagcaagtaaaaaatttctaagaaaccatatacatccacaatgcaacaaagaaggcacaatactgttt 256  Q
    ||||||||||||||||||||||||||||||||| |||||||||| | |||| |||||||||||||||||||||||||| ||||||||| || ||| ||||    
T  1237479 tatcacattttcttaaccacatactcattagagtgcaagtaaaataattcttagaaaccatatacatccacaatgcaataaagaaggcgcagtacagttt 1237578  T
Q  257 tt 258  Q
    ||    
T  1237579 tt 1237580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 65 - 139
Target Start/End: Complemental strand, 1182464 - 1182389
Alignment:
Q  65 atcaaggactccagcatctcatccaaaaccccatttgtactcaatatgcaataac-atatcctaagtattcaatat 139  Q
    |||||||||||||  |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1182464 atcaaggactccattatctgatccaaaaccccatttgtactcaatatgcaataacaatatcctaagtattcaatat 1182389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 418 - 580
Target Start/End: Complemental strand, 1197492 - 1197331
Alignment:
Q  418 aacattctcatcaatctccttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgctgcaaaagcaatcgttc 517  Q
    |||||||||||| |||| | ||| |||  |||||||||||||||||||| |||||||||||||||| || ||| |||||   ||||||||||| ||||||    
T  1197492 aacattctcatcgatcttcatagtgctcgtgactttcacatccttcaagtcatgccaccaacactttgtatcatcagaa---ctgcaaaagcagtcgttc 1197396  T
Q  518 --nnnnnnncccattagcgtctcatagaaaaactgtagttttagatgataaacaaaatagagtta 580  Q
             | ||||| ||||||||||||||||||||||| | || ||| |||||||||||||||    
T  1197395 tttttttttctcattaacgtctcatagaaaaactgtagttatcgacgattaacaaaatagagtta 1197331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 156 - 233
Target Start/End: Original strand, 793878 - 793956
Alignment:
Q  156 ttatcacattttcttaaccacatactcattagagagcaagtaaaaaa-tttctaagaaaccatatacatccacaatgca 233  Q
    |||||||||||||||||||||||| |||||| | |||||||||||||  |||| |||||||||||||| ||||||||||    
T  793878 ttatcacattttcttaaccacatattcattaaaaagcaagtaaaaaagattcttagaaaccatatacaaccacaatgca 793956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 1237201 - 1237254
Alignment:
Q  12 tcatcacctaataacacaccagagcactaccaataacaaatcttaggcctaaaa 65  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  1237201 tcatcacctaataaaacaccagagcactaccaataacaaatcttaggcataaaa 1237254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 669 - 798
Target Start/End: Original strand, 1237376 - 1237511
Alignment:
Q  669 actcaatatgcaataacaatatcctaagtattcaatctaccctatatcaataaatctcatcacaagtata--------atactcattagagaacacttat 760  Q
    |||||||||||||||||||||||||||||| ||||| |  | || ||||| |||||||| ||||||||||        ||||||||||||||  || |||    
T  1237376 actcaatatgcaataacaatatcctaagtactcaatatgtcatacatcaacaaatctcaacacaagtataataatcatatactcattagagagaacctat 1237475  T
Q  761 cactttatctcattttcttaaccaaatactcattagag 798  Q
    |||  |||| |||||||||||||| |||||||||||||    
T  1237476 cac--tatcacattttcttaaccacatactcattagag 1237511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 1193539 - 1193486
Alignment:
Q  12 tcatcacctaataacacaccagagcactaccaataacaaatcttaggcctaaaa 65  Q
    |||||||||||||||||||||||  |||||| ||||||||||||||||||||||    
T  1193539 tcatcacctaataacacaccagaatactacctataacaaatcttaggcctaaaa 1193486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 1176737 - 1176683
Alignment:
Q  193 aagtaaaaaatttctaagaaaccatatacatccacaatgcaacaaagaaggcaca 247  Q
    |||||||||| |||| |||||||||||||| ||||||||||| ||||||||||||    
T  1176737 aagtaaaaaaattcttagaaaccatatacaaccacaatgcaataaagaaggcaca 1176683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 1182561 - 1182508
Alignment:
Q  12 tcatcacctaataacacaccagagcactaccaataacaaatcttaggcctaaaa 65  Q
    |||| |||||||||||||||||| ||||| ||||| ||||||||||||||||||    
T  1182561 tcattacctaataacacaccagaacactaacaataccaaatcttaggcctaaaa 1182508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 739 - 799
Target Start/End: Complemental strand, 1193303 - 1193243
Alignment:
Q  739 atactcattagagaacacttatcactttatctcattttcttaaccaaatactcattagaga 799  Q
    |||||||  ||||| ||||||||| || ||| |||||||||||||| ||||||||||||||    
T  1193303 atactcacaagagagcacttatcatttcatcacattttcttaaccacatactcattagaga 1193243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 1237368 - 1237414
Alignment:
Q  95 ccatttgtactcaatatgcaataac-atatcctaagtattcaatatg 140  Q
    ||||||| ||||||||||||||||| |||||||||||| ||||||||    
T  1237368 ccatttgaactcaatatgcaataacaatatcctaagtactcaatatg 1237414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 754 - 795
Target Start/End: Original strand, 793867 - 793908
Alignment:
Q  754 cacttatcactttatctcattttcttaaccaaatactcatta 795  Q
    |||||||||||||||| |||||||||||||| ||| ||||||    
T  793867 cacttatcactttatcacattttcttaaccacatattcatta 793908  T

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Target: chr4 (Bit Score: 188; Significance: 1e-101; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 310 - 641
Target Start/End: Complemental strand, 10203547 - 10203224
Alignment:
Q  310 atatcaaacttctaaacatcattaatattctagactgaaggtaatatttgtttgatcttcataagctggtgcataagctggcgataaatctaaaattgtg 409  Q
    |||| |||||||||||||  ||||| |||||||  |||||||||||||||||||||||  ||||||||||||||||||||||||  ||||||||||||||    
T  10203547 atattaaacttctaaacaaaattaaaattctagcttgaaggtaatatttgtttgatctggataagctggtgcataagctggcgacgaatctaaaattgtg 10203448  T
Q  410 ttaaaacaaacattctcatcaatctccttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgctgcaaaagc 509  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||   |||||||||    
T  10203447 ttaaaacaaacattctcatcaatcttcttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagtagaaa---tgcaaaagc 10203351  T
Q  510 aatcgt--tcnnnnnnncccattagcgtctcatagaaaaactgtagttttagatgataaacaaaatagagttatacaactcacaagctacacataacata 607  Q
    ||||||  ||       ||||||||||||||||| ||||||||||||||||||||||||||||||||||||  || |||||||||||  |||| ||   |    
T  10203350 aatcgttctctttttttcccattagcgtctcataaaaaaactgtagttttagatgataaacaaaatagagt--tagaactcacaagc--cacagaa---a 10203258  T
Q  608 acattaattataaacattttggagttaaatgcac 641  Q
    |||||||||||||||||||||||| |||||||||    
T  10203257 acattaattataaacattttggagataaatgcac 10203224  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 158 - 263
Target Start/End: Complemental strand, 10203863 - 10203758
Alignment:
Q  158 atcacattttcttaaccacatactcattagagagcaagtaaaaaatttctaagaaaccatatacatccacaatgcaacaaagaaggcacaatactgtttt 257  Q
    |||||||||| ||||||||||||||||||||||||||||||| || |||| ||||| ||||| |||| || ||| || |||||||||||| | |||| ||    
T  10203863 atcacatttttttaaccacatactcattagagagcaagtaaacaaattcttagaaatcatattcatctacgatgaaaaaaagaaggcacattcctgtatt 10203764  T
Q  258 ttataa 263  Q
    ||||||    
T  10203763 ttataa 10203758  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 12857257 - 12857204
Alignment:
Q  12 tcatcacctaataacacaccagagcactaccaataacaaatcttaggcctaaaa 65  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  12857257 tcatcacctaataacacaccagaacactacctataacaaatcttaggcctaaaa 12857204  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 739 - 799
Target Start/End: Complemental strand, 10203891 - 10203831
Alignment:
Q  739 atactcattagagaacacttatcactttatctcattttcttaaccaaatactcattagaga 799  Q
    ||||||| |||||| |||||||||||| ||| |||||| ||||||| ||||||||||||||    
T  10203891 atactcactagagagcacttatcacttcatcacatttttttaaccacatactcattagaga 10203831  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 418 - 483
Target Start/End: Complemental strand, 49611958 - 49611893
Alignment:
Q  418 aacattctcatcaatctccttagagcttatgactttcacatccttcaagccatgccaccaacactt 483  Q
    ||||||||||||||| | ||| ||  ||  |||||||| |||||||||||||||||||||||||||    
T  49611958 aacattctcatcaattttctttgaagttgagactttcaaatccttcaagccatgccaccaacactt 49611893  T

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Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 418 - 500
Target Start/End: Complemental strand, 5171649 - 5171567
Alignment:
Q  418 aacattctcatcaatctccttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgc 500  Q
    ||||||||| ||||||| | |||||||| | ||||||||||||||||||||||||||||||||||| || |||  ||||||||    
T  5171649 aacattctcgtcaatcttcatagagcttgtaactttcacatccttcaagccatgccaccaacacttggtatcacaagaaatgc 5171567  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 421 - 486
Target Start/End: Original strand, 1795823 - 1795888
Alignment:
Q  421 attctcatcaatctccttagagcttatgactttcacatccttcaagccatgccaccaacacttagt 486  Q
    |||||||||||||| |   ||||||||||||||||||| |||||||||||||||||||||||||||    
T  1795823 attctcatcaatcttcaccgagcttatgactttcacattcttcaagccatgccaccaacacttagt 1795888  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 425 - 486
Target Start/End: Complemental strand, 5185182 - 5185121
Alignment:
Q  425 tcatcaatctccttagagcttatgactttcacatccttcaagccatgccaccaacacttagt 486  Q
    |||||||||| | | ||||||||||||||||||| |||||||||||||||||||||||||||    
T  5185182 tcatcaatcttcattgagcttatgactttcacattcttcaagccatgccaccaacacttagt 5185121  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 421 - 486
Target Start/End: Complemental strand, 5195180 - 5195115
Alignment:
Q  421 attctcatcaatctccttagagcttatgactttcacatccttcaagccatgccaccaacacttagt 486  Q
    |||||||||||||| |   ||||||||||||||||||| |||||||||||||||||||||||||||    
T  5195180 attctcatcaatcttcaccgagcttatgactttcacattcttcaagccatgccaccaacacttagt 5195115  T

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Target: chr8; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 418 - 486
Target Start/End: Complemental strand, 5207181 - 5207113
Alignment:
Q  418 aacattctcatcaatctccttagagcttatgactttcacatccttcaagccatgccaccaacacttagt 486  Q
    ||||||||||||||||| | |||||||  ||||||| ||||||||||||||||||||||||||| ||||    
T  5207181 aacattctcatcaatcttcatagagctcgtgacttttacatccttcaagccatgccaccaacacctagt 5207113  T

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Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 440 - 486
Target Start/End: Complemental strand, 5177725 - 5177679
Alignment:
Q  440 gagcttatgactttcacatccttcaagccatgccaccaacacttagt 486  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  5177725 gagcttatgactttcacattcttcaagccatgccaccaacacttagt 5177679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 440 - 486
Target Start/End: Original strand, 5198925 - 5198971
Alignment:
Q  440 gagcttatgactttcacatccttcaagccatgccaccaacacttagt 486  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  5198925 gagcttatgactttcacattcttcaagccatgccaccaacacttagt 5198971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 440 - 486
Target Start/End: Complemental strand, 6231677 - 6231631
Alignment:
Q  440 gagcttatgactttcacatccttcaagccatgccaccaacacttagt 486  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  6231677 gagcttatgactttcacattcttcaagccatgccaccaacacttagt 6231631  T

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Target: chr7 (Bit Score: 46; Significance: 9e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 425 - 486
Target Start/End: Complemental strand, 5178874 - 5178813
Alignment:
Q  425 tcatcaatctccttagagcttatgactttcacatccttcaagccatgccaccaacacttagt 486  Q
    |||||||||| | | ||||||||||||||||||| |||||||||||||||||||||||||||    
T  5178874 tcatcaatcttcattgagcttatgactttcacattcttcaagccatgccaccaacacttagt 5178813  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 418 - 557
Target Start/End: Complemental strand, 8306820 - 8306682
Alignment:
Q  418 aacattctcatcaatctccttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgctgcaaaagcaatcgt-- 515  Q
    ||||||||||||||| | | | |||| | ||||||||| ||||||||||||||||||||||||||| || |||  |||   |||||||||||| ||||      
T  8306820 aacattctcatcaattttcattgagcgtgtgactttcaaatccttcaagccatgccaccaacactttgtatcattaga---gctgcaaaagcagtcgtcg 8306724  T
Q  516 tcnnnnnnncccattagcgtctcatagaaaaactgtagtttt 557  Q
    ||       | |||||| ||||||||||||||||||||||||    
T  8306723 tcttttcttctcattagagtctcatagaaaaactgtagtttt 8306682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 20257183 - 20257226
Alignment:
Q  22 ataacacaccagagcactaccaataacaaatcttaggcctaaaa 65  Q
    ||||||||| ||| ||||||| ||||||||||||||||||||||    
T  20257183 ataacacactagaacactacctataacaaatcttaggcctaaaa 20257226  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 534 - 606
Target Start/End: Original strand, 8551885 - 8551955
Alignment:
Q  534 gtctcatagaaaaactgtagttttagatgataaacaaaatagagttatacaactcacaagctacacataacat 606  Q
    |||||||||||||||||||||||| ||  || || ||||||| |||||  |||||| ||||| ||||||||||    
T  8551885 gtctcatagaaaaactgtagttttggacaattaataaaatagcgttat--aactcagaagctccacataacat 8551955  T

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Target: scaffold0302 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 19794 - 19741
Alignment:
Q  12 tcatcacctaataacacaccagagcactaccaataacaaatcttaggcctaaaa 65  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||    
T  19794 tcatcacctaataacacaccagaacactacctataacaaatcttaggtctaaaa 19741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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