View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18349_low_3 (Length: 676)
Name: NF18349_low_3
Description: NF18349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18349_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 45756953 - 45757388
Alignment:
| Q |
1 |
cacatgaagatttcaccttattagatattcgcattttgcgatcattattaacttattattactcttattcttttttcttctagatctttcgtatctacta |
100 |
Q |
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| T |
45756953 |
cacattaagatttcaccttattagatattcgcattttgccaccattattaacttattattactcttattcttttttcttctagatctttcgtatctacta |
45757052 |
T |
|
| Q |
101 |
caagtaacgtgctttttnnnnnnnntggtaacataccactaattagagttccaatggatttttatacggcaaattgttgtattgaccaccttgataagtt |
200 |
Q |
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| T |
45757053 |
caagtaacgtgctttttaaaaaaaatggtaacataccactaattagagttccaatggatttttatacggcaaattgttgtattgaccaccttgataagtt |
45757152 |
T |
|
| Q |
201 |
gttgacagtagattattactactagtgaatatagaacatcttaattaacatgcataatataatatgtttccattatgttttgggcgcatgcacatgcaca |
300 |
Q |
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| T |
45757153 |
gttgacagtagattactactactagtgaatatagaacatc----ttaacatgcataatataatatgtttccattatgttttgggcg------catgcaca |
45757242 |
T |
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| Q |
301 |
tgcacatagaatgatgcttcctacctta------------ctatagtggaagatttatacggtcacattttatttcgtggaaagtgattgattcccaaac |
388 |
Q |
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| T |
45757243 |
tgcacatagaatgatgcttcctaccttacatcaatataagctatagtgggagatttatacggtcgcattttatttcgtggaaagtgattgattcccaaac |
45757342 |
T |
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| Q |
389 |
tcaatttccttgtaacttacgaatgtttccaaaggcttcctttggt |
434 |
Q |
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| T |
45757343 |
tcaatttccttgtaacttacgaatgtttccaaaggcttcctttggt |
45757388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 509 - 647
Target Start/End: Original strand, 45757464 - 45757602
Alignment:
| Q |
509 |
atttaagatttgaagtactctcgggttggtaagaatacgaaaatgcacaacgtacggtatgtttttgccccttaaagaaaccacaaactcacactatagg |
608 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
45757464 |
atttaagatttgaagtactctcgagttggtaagaatacgaaaatgcacaacgtacggtatttttttgccccttaaagaaaccacaaactcacactgtagg |
45757563 |
T |
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| Q |
609 |
ttaggattccaagagctggcattcacttcggtgcaacac |
647 |
Q |
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| T |
45757564 |
ttaggattccaagagctggcattcacttcggtgcaacac |
45757602 |
T |
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