View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18349_low_4 (Length: 463)
Name: NF18349_low_4
Description: NF18349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18349_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 18 - 451
Target Start/End: Complemental strand, 15951502 - 15951069
Alignment:
| Q |
18 |
attaccgtttattttggataggttatccctgtgaacagggaaaataatgcagctaaaacaaagaagaaaccggtggcagcaaaatctaagtcatctcaaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15951502 |
attaccgtttattttggataggttatccctgtgaatagggaaaataatgcagccaaaacaaagaagaaaccggtggcagcaaaatctaaggcatctcaaa |
15951403 |
T |
|
| Q |
118 |
tttcgacaccagtggcagcaaaatctaaggcatctcaaatttcgacaccgaggtattcaaagcctacatcagctccaactaaaacattggcatctgccgc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15951402 |
tttcgacaccagtggcagcaaaatctaaggcatctcaaatttcgacaccgagatattcaaagcctacatcagctccaactaaaacattggcatctgccgc |
15951303 |
T |
|
| Q |
218 |
ttcaactaaaaagggaaatccgcagtctttacctaggaggcaagttacttctagtgtggagaacaaaaaagttgcgaccagatctttgcacttgtctatg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
15951302 |
ttcaactaaaaagggaaatccgcagtctttacctaggagacaagttacttctagtgtggagaacaaaaaagctgcgaccagatctttgcacttgtcgatg |
15951203 |
T |
|
| Q |
318 |
agcttaggtccaagtaatcctgagccagttcctcatactactgatccagttcctcgtactatgaggaaatctctcattatggatagtatgggggataagg |
417 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15951202 |
agcttaggtccaagtaatcctgaaccagttcctcatactactgatccagttcctcatactatgaggaaatctctcattatggatagtatgggggataagg |
15951103 |
T |
|
| Q |
418 |
acatagtcaaacgagcatttaagactttccagaa |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
15951102 |
acatagtcaaacgagcatttaagactttccagaa |
15951069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University