View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1834_high_10 (Length: 252)
Name: NF1834_high_10
Description: NF1834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1834_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 50421657 - 50421892
Alignment:
| Q |
18 |
ctaaacaaccaaaactacttttaaccattatgctaacatgagttaggtttagtttaaaaccattttccgataatctaacaccgggaagtgagaagctttc |
117 |
Q |
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| T |
50421657 |
ctaaacaaccaaaactacttttaaccattatgctaacatgagttaggtttagtttaaaaccattttccgataatctaacaccgggaagtgagaagctttc |
50421756 |
T |
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| Q |
118 |
gcttcccaattttcatccaacaaaatatttgttgttttcacatcgcgatgaatgttgatggtgtattttgcaccg----gtgtgaaggtaatcaagtctc |
213 |
Q |
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| T |
50421757 |
gcttcccaattttcatccaacaaaatatttgttgttttcacatcgcgatgaatgttgatggtgtattttgcaccggtacgtgtgaaggtaatcaagtctc |
50421856 |
T |
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| Q |
214 |
tttgcagcaccaatgcaaatttccaacctttgcttc |
249 |
Q |
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| T |
50421857 |
cttgcagcaccaatgcaaatttccaacctttgcttc |
50421892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 249
Target Start/End: Original strand, 35904623 - 35904724
Alignment:
| Q |
145 |
tttgttgttttcacatcgcgatgaatgttgatggtgtattttgcaccggtgtgaaggtaatcaagtctctttgcagcaccaatgcaaatttccaaccttt |
244 |
Q |
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| T |
35904623 |
tttgttgttttcacatctctatgaatt---atagtgtactttgcacctgtgtgaaggtaatgaagacctcttgcagcaccaatgcaaatctccaaccttt |
35904719 |
T |
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| Q |
245 |
gcttc |
249 |
Q |
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||||| |
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| T |
35904720 |
gcttc |
35904724 |
T |
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