View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1834_high_15 (Length: 236)
Name: NF1834_high_15
Description: NF1834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1834_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 35800481 - 35800701
Alignment:
| Q |
1 |
caaagacggactcttatgattgttacaaagttagaaaattagttcgcaacattttcatgaataaaattgttctcaacaaattcaaaggttatccaaagag |
100 |
Q |
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| T |
35800481 |
caaagacggactcttatgattattacaaagttagaaaattagttcgcaacattttcatgaataaaattgttctcaacaaactcaaaggttatccgaagag |
35800580 |
T |
|
| Q |
101 |
gataaaagacttcatagtggtgatggatcgttggggaaaatgctatatggttgaaggtggtggtcggaatccgaggcggagatggtggtaaaagaggtgt |
200 |
Q |
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|||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||| |
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| T |
35800581 |
gataaaggacttcatagtggtgatggatcgttggagaaagtgctatatggttgaaggtgatggtcggaatccaaggcggagatggtggcaaaagaggtgt |
35800680 |
T |
|
| Q |
201 |
acatgcaagcaccctagttga |
221 |
Q |
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||||||||||||||||||||| |
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| T |
35800681 |
acatgcaagcaccctagttga |
35800701 |
T |
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