View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1834_high_17 (Length: 235)

Name: NF1834_high_17
Description: NF1834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1834_high_17
NF1834_high_17
[»] chr7 (5 HSPs)
chr7 (1-215)||(14653056-14653270)
chr7 (1-215)||(14661491-14661705)
chr7 (6-156)||(14757772-14757922)
chr7 (12-178)||(14749831-14749997)
chr7 (10-126)||(14764962-14765078)
[»] chr5 (5 HSPs)
chr5 (1-215)||(17690482-17690696)
chr5 (1-215)||(17683556-17683770)
chr5 (6-156)||(17570613-17570763)
chr5 (12-153)||(17621824-17621965)
chr5 (10-126)||(17563521-17563637)
[»] chr1 (4 HSPs)
chr1 (10-134)||(15196051-15196175)
chr1 (10-134)||(15216469-15216593)
chr1 (10-134)||(15195400-15195524)
chr1 (10-134)||(15215818-15215942)
[»] chr8 (1 HSPs)
chr8 (17-134)||(24395374-24395491)


Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 14653056 - 14653270
Alignment:
Q  1 aatgcgatcgagaaggagatgattgaaaatcccatgccgagattaatcaatatggagaactcttggtttgtaaacatgctttgtggtactaaatatgaag 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14653056 aatgcgatcgagaaggagatgattgaaaatcccatgctgagattaatcaatatggagaactctgggtttgtaaacatgctttgtggtactaaatatgaag 14653155  T
Q  101 atttggaaagaatgtataacttgttccgacgtgttcctaatggtctctcaaaaataaaagaagtgatgatctcacacattcgagtgtccgttaacaagct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  14653156 atttggaaagaatgtataacttgttccgacgtgttcctaatggtctctcaaaaataaaagaagtgatgatctcacacattcgagtgtctgttaacaagct 14653255  T
Q  201 tgttactgatccaaa 215  Q
    |||||||||||||||    
T  14653256 tgttactgatccaaa 14653270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 14661491 - 14661705
Alignment:
Q  1 aatgcgatcgagaaggagatgattgaaaatcccatgccgagattaatcaatatggagaactcttggtttgtaaacatgctttgtggtactaaatatgaag 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  14661491 aatgcgatcgagaaggagatgattgaaaatcccatgctgagattaatcaatatggagaactctgggtttgtaaacatgctttgtggtaataaatatgaag 14661590  T
Q  101 atttggaaagaatgtataacttgttccgacgtgttcctaatggtctctcaaaaataaaagaagtgatgatctcacacattcgagtgtccgttaacaagct 200  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||| |||||| |||||||||||||||||||||||||||| |||||||    
T  14661591 atttggaaagaatgtataacttgttccgtcgtgttcctgatggtctcttaaaaatacaagaagcgatgatctcacacattcgagtgtccgttgacaagct 14661690  T
Q  201 tgttactgatccaaa 215  Q
    |||||||||||||||    
T  14661691 tgttactgatccaaa 14661705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 6 - 156
Target Start/End: Complemental strand, 14757922 - 14757772
Alignment:
Q  6 gatcgagaaggagatgattgaaaatcccatgccgagattaatcaatatggagaactcttggtttgtaaacatgctttgtggtactaaatatgaagatttg 105  Q
    |||||||||||||||||||||||||| |||||  ||||||||| |||||||||||||  |||| ||||||||||||||||||  ||||||||||||||||    
T  14757922 gatcgagaaggagatgattgaaaatcacatgcttagattaatccatatggagaactcggggttagtaaacatgctttgtggtgataaatatgaagatttg 14757823  T
Q  106 gaaagaatgtataacttgttccgacgtgttcctaatggtctctcaaaaata 156  Q
    | |||||||||||||||||| || |||||| ||||||||||||| ||||||    
T  14757822 ggaagaatgtataacttgtttcgtcgtgttactaatggtctctcgaaaata 14757772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 178
Target Start/End: Complemental strand, 14749997 - 14749831
Alignment:
Q  12 gaaggagatgattgaaaatcccatgccgagattaatcaatatggagaactcttggtttgtaaacatgctttgtggtactaaatatgaagatttggaaaga 111  Q
    ||||||||  |||||||||| |||||  ||||||||| |  || |||| ||| |||| ||||||||||||||||||  ||||||| | |||||||  |||    
T  14749997 gaaggagactattgaaaatcacatgcttagattaatccaattgcagaattctgggttagtaaacatgctttgtggtgataaatataacgatttgggtaga 14749898  T
Q  112 atgtataacttgttccgacgtgttcctaatggtctctcaaaaataaaagaagtgatgatctcacaca 178  Q
    ||||||||||||||||  ||||||||| |||||||||  ||||||   ||||||||||  |||||||    
T  14749897 atgtataacttgttccatcgtgttcctgatggtctcttgaaaatacgtgaagtgatgacttcacaca 14749831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 126
Target Start/End: Complemental strand, 14765078 - 14764962
Alignment:
Q  10 gagaaggagatgattgaaaatcccatgccgagattaatcaatatggagaactcttggtttgtaaacatgctttgtggtactaaatatgaagatttggaaa 109  Q
    |||||||||||| | ||||||| |||||  ||||||||| ||| |||||  ||| |||| |||||||||||| ||| |  |||||||||||||||||  |    
T  14765078 gagaaggagatgctcgaaaatcacatgcttagattaatctataaggagacttctgggttagtaaacatgcttggtgatgataaatatgaagatttgggta 14764979  T
Q  110 gaatgtataacttgttc 126  Q
    | |||||||||||||||    
T  14764978 ggatgtataacttgttc 14764962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 17690696 - 17690482
Alignment:
Q  1 aatgcgatcgagaaggagatgattgaaaatcccatgccgagattaatcaatatggagaactcttggtttgtaaacatgctttgtggtactaaatatgaag 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  17690696 aatgcgatcgagaaggagatgattgaaaatcccatgcctagattaatcaatatggagaactctgggtttgtaaacatgatttgtggtactaaatatgaag 17690597  T
Q  101 atttggaaagaatgtataacttgttccgacgtgttcctaatggtctctcaaaaataaaagaagtgatgatctcacacattcgagtgtccgttaacaagct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  17690596 atttggaaagaatgtataacttgttccgacgtgttcctaatggtctctcaaaaataaaagacgtgatgatctcacacattcgagtgtccgttaacaagct 17690497  T
Q  201 tgttactgatccaaa 215  Q
    ||||| |||||||||    
T  17690496 tgttattgatccaaa 17690482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 17683770 - 17683556
Alignment:
Q  1 aatgcgatcgagaaggagatgattgaaaatcccatgccgagattaatcaatatggagaactcttggtttgtaaacatgctttgtggtactaaatatgaag 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  17683770 aatgcgatcgagaaggagatgattgaaaatcccatgctgagattaatcaatatggagaactctgggtttgtaaacatgctttgtggtaataaatatgaag 17683671  T
Q  101 atttggaaagaatgtataacttgttccgacgtgttcctaatggtctctcaaaaataaaagaagtgatgatctcacacattcgagtgtccgttaacaagct 200  Q
    |||||||||||||||||||||||||||| || |||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||    
T  17683670 atttggaaagaatgtataacttgttccgtcgggttcctgatggtctctcaaaaatacaagaagcgatgatctcacacattcgagtgtccgttgacaagct 17683571  T
Q  201 tgttactgatccaaa 215  Q
    |||||||||||||||    
T  17683570 tgttactgatccaaa 17683556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 6 - 156
Target Start/End: Original strand, 17570613 - 17570763
Alignment:
Q  6 gatcgagaaggagatgattgaaaatcccatgccgagattaatcaatatggagaactcttggtttgtaaacatgctttgtggtactaaatatgaagatttg 105  Q
    |||||||||||||||||||||||||| |||||  ||||||||| |||||||||||||  |||| ||||||||||||||||||  ||||||||||||||||    
T  17570613 gatcgagaaggagatgattgaaaatcacatgcttagattaatccatatggagaactcggggttagtaaacatgctttgtggtgataaatatgaagatttg 17570712  T
Q  106 gaaagaatgtataacttgttccgacgtgttcctaatggtctctcaaaaata 156  Q
    | |||||||||||||||||| || |||||| ||||||||||||| ||||||    
T  17570713 ggaagaatgtataacttgtttcgtcgtgttactaatggtctctcgaaaata 17570763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 12 - 153
Target Start/End: Complemental strand, 17621965 - 17621824
Alignment:
Q  12 gaaggagatgattgaaaatcccatgccgagattaatcaatatggagaactcttggtttgtaaacatgctttgtggtactaaatatgaagatttggaaaga 111  Q
    ||||||||| |||||||||  |||||  ||||||||| ||||||| || ||| |||| ||||||||| ||||||||  |||||||||||| ||||  |||    
T  17621965 gaaggagattattgaaaatgacatgcttagattaatccatatggaaaattctgggttagtaaacatgatttgtggtgataaatatgaagacttgggtaga 17621866  T
Q  112 atgtataacttgttccgacgtgttcctaatggtctctcaaaa 153  Q
    ||||||||||||||||| ||||||||| ||| ||||| ||||    
T  17621865 atgtataacttgttccgtcgtgttcctgatgttctctaaaaa 17621824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 126
Target Start/End: Original strand, 17563521 - 17563637
Alignment:
Q  10 gagaaggagatgattgaaaatcccatgccgagattaatcaatatggagaactcttggtttgtaaacatgctttgtggtactaaatatgaagatttggaaa 109  Q
    |||||||||||| | ||||||| |||||  ||||||||| ||| |||||  ||| |||| |||||||||||| ||| |  |||||||||||||||||  |    
T  17563521 gagaaggagatgctcgaaaatcacatgcttagattaatctataaggagacttctgggttagtaaacatgcttggtgatgataaatatgaagatttgggta 17563620  T
Q  110 gaatgtataacttgttc 126  Q
    | |||||||||||||||    
T  17563621 ggatgtataacttgttc 17563637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 10 - 134
Target Start/End: Complemental strand, 15196175 - 15196051
Alignment:
Q  10 gagaaggagatgattgaaaatcccatgccgagattaatcaatatggagaactcttggtttgtaaacatgctttgtggtactaaatatgaagatttggaaa 109  Q
    |||||||||||||| ||||||| |||||  ||||||||| |||||||||||||| |||| ||||||||| || ||| |  ||| ||| ||||||||   |    
T  15196175 gagaaggagatgatcgaaaatcacatgcttagattaatccatatggagaactctgggttagtaaacatgattggtgatgataagtataaagatttgatta 15196076  T
Q  110 gaatgtataacttgttccgacgtgt 134  Q
    ||||||||||||||||||| |||||    
T  15196075 gaatgtataacttgttccgtcgtgt 15196051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 10 - 134
Target Start/End: Complemental strand, 15216593 - 15216469
Alignment:
Q  10 gagaaggagatgattgaaaatcccatgccgagattaatcaatatggagaactcttggtttgtaaacatgctttgtggtactaaatatgaagatttggaaa 109  Q
    |||||||||||||| ||||||| |||||  ||||||||| |||||||||||||| |||| ||||||||| || ||| |  ||| ||| ||||||||   |    
T  15216593 gagaaggagatgatcgaaaatcacatgcttagattaatccatatggagaactctgggttagtaaacatgattggtgatgataagtataaagatttgatta 15216494  T
Q  110 gaatgtataacttgttccgacgtgt 134  Q
    ||||||||||||||||||| |||||    
T  15216493 gaatgtataacttgttccgtcgtgt 15216469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 134
Target Start/End: Complemental strand, 15195524 - 15195400
Alignment:
Q  10 gagaaggagatgattgaaaatcccatgccgagattaatcaatatggagaactcttggtttgtaaacatgctttgtggtactaaatatgaagatttggaaa 109  Q
    |||||||||||||| ||||||| ||||   |||||||||  ||||||||||||| |||| ||||||||| || ||| |  ||| ||||||||||||   |    
T  15195524 gagaaggagatgatcgaaaatcacatgattagattaatccttatggagaactctgggttagtaaacatgattggtgatgataagtatgaagatttgagta 15195425  T
Q  110 gaatgtataacttgttccgacgtgt 134  Q
    ||||||||||||||||||| |||||    
T  15195424 gaatgtataacttgttccgtcgtgt 15195400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 134
Target Start/End: Complemental strand, 15215942 - 15215818
Alignment:
Q  10 gagaaggagatgattgaaaatcccatgccgagattaatcaatatggagaactcttggtttgtaaacatgctttgtggtactaaatatgaagatttggaaa 109  Q
    |||||||||||||| ||||||| ||||   |||||||||  ||||||||||||| |||| ||||||||| || ||| |  ||| ||||||||||||   |    
T  15215942 gagaaggagatgatcgaaaatcacatgattagattaatccttatggagaactctgggttagtaaacatgattggtgatgataagtatgaagatttgagta 15215843  T
Q  110 gaatgtataacttgttccgacgtgt 134  Q
    ||||||||||||||||||| |||||    
T  15215842 gaatgtataacttgttccgtcgtgt 15215818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 24395491 - 24395374
Alignment:
Q  17 agatgattgaaaatcccatgccgagattaatcaatatggagaactcttggtttgtaaacatgctttgtggtactaaatatgaagatttggaaagaatgta 116  Q
    ||||||||||||||| |||||  || |||||| |||||||||| ||| | || || ||||||||||||| |  |||||||||||||||||  || |||||    
T  24395491 agatgattgaaaatcacatgctcaggttaatccatatggagaattctggtttagtcaacatgctttgtgatgataaatatgaagatttgggtaggatgta 24395392  T
Q  117 taacttgttccgacgtgt 134  Q
    |||||||||||| |||||    
T  24395391 taacttgttccgccgtgt 24395374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University