View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1834_high_21 (Length: 233)
Name: NF1834_high_21
Description: NF1834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1834_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 38484057 - 38483839
Alignment:
| Q |
1 |
cttttcagcaccatcctaactccaagcaacttcgtctcccttgaaaccaacctccattgcataactatatcaagcaaagattgaaaaaacctcaaaccac |
100 |
Q |
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| T |
38484057 |
cttttcagcaccatcctaactccaagcaacttcgtctcccttgaaaccaacctccattgcataactatatcaagcaaagattgaaaaaacctcaaaccac |
38483958 |
T |
|
| Q |
101 |
tccacgtaaaaacaacagttaaaagcagaacctgcaaatcgcgttcctccatcaccgcacgccaaggataagctctatcattccaaccaacaataatcgc |
200 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38483957 |
tccatgtaaaaacaaccgttaaaagcagaacctgcaaatcgcgttcctccatcaccgcacgccaaggataagctctatcattccaaccaacaataatcgc |
38483858 |
T |
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| Q |
201 |
cacttgaagaaacaaaatc |
219 |
Q |
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||||||||||||||||||| |
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| T |
38483857 |
cacttgaagaaacaaaatc |
38483839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 30118454 - 30118347
Alignment:
| Q |
3 |
tttcagcaccatcctaactccaagcaacttcgtctcccttgaaaccaacctccattgcataactatatcaagcaaagattgaaaaaacctcaaaccactc |
102 |
Q |
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|||||| | |||||| |||||||||| ||| |||||||| || |||||||| | ||||| | | |||||||||||| || |||||||||| ||||||| |
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| T |
30118454 |
tttcagaaacatcctcactccaagcatctttgtctccctcgataccaacctatactgcatgcccacatcaagcaaagactgcaaaaacctcataccactc |
30118355 |
T |
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| Q |
103 |
cacgtaaa |
110 |
Q |
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|| ||||| |
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| T |
30118354 |
catgtaaa |
30118347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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