View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1834_high_4 (Length: 424)
Name: NF1834_high_4
Description: NF1834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1834_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 16 - 412
Target Start/End: Original strand, 36949057 - 36949453
Alignment:
| Q |
16 |
aagctgaggaataaaggcatgaaggatgaatcacattttgatcttgcaatggatagtgattttgagagaagctctctacctaagaaatttacctatgaag |
115 |
Q |
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| T |
36949057 |
aagctgaggaataaaggcatgaaggatgaatcacattttgatcttgcaatggatagtgattttgagagaagctctctacctaagaaatttacctatgaag |
36949156 |
T |
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| Q |
116 |
aacttgctagatcaactaacaactttgcaaatgaacacaaaattggagctggaggttttggagcagtgtacaagggatttataagagacttgaaacatca |
215 |
Q |
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| T |
36949157 |
aacttgctagatcaactaacaactttgcaaatgaacacaaaattggagctggaggttttggagcagtgtacaagggatttataagagacttgaaacatca |
36949256 |
T |
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| Q |
216 |
tgttgcaattaagaaagtttctaaggaatcaaatcaaggagtgaaggaatatgcatctgaagtcaaagtcattagccaattgaggcataagaatttggtc |
315 |
Q |
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| T |
36949257 |
tgttgcaattaagaaggtttctaaggaatcaaatcaaggagtgaaggaatatgcatctgaagtcaaagtcattagccaattgaggcataagaatttggtc |
36949356 |
T |
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| Q |
316 |
caactctatggctggtgtcacaagcagaatgatctgcttttagtttatgagtttgtggaaaatggaagcttagattcttatattttcaaaggaaaag |
412 |
Q |
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| T |
36949357 |
caactctatggctggtgtcacaagcagaatgatctgcttttagtttatgagtttgtggaaaatggaagcttagattcttatattttcaaaggaaaag |
36949453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 7 - 412
Target Start/End: Original strand, 36959182 - 36959587
Alignment:
| Q |
7 |
gtgagatgaaagctgaggaataaaggcatgaaggatgaatcacattttgatcttgcaatggatagtgattttgagagaagctctctacctaagaaattta |
106 |
Q |
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| T |
36959182 |
gtgaaatggaagctgaagaagaaaggcatgaaggatgctttgcattttgatcttgcaatggatagtgattttgaaagaatctctctacctaagaaattta |
36959281 |
T |
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| Q |
107 |
cctatgaagaacttgctagatcaactaacaactttgcaaatgaacacaaaattggagctggaggttttggagcagtgtacaagggatttataagagactt |
206 |
Q |
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| T |
36959282 |
tatatgaagaacttgctagatcaactaacaactttgcaaatgaacacaaaattggagctggaggttttggagcagtgtacaagggatttataagagactt |
36959381 |
T |
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| Q |
207 |
gaaacatcatgttgcaattaagaaagtttctaaggaatcaaatcaaggagtgaaggaatatgcatctgaagtcaaagtcattagccaattgaggcataag |
306 |
Q |
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| T |
36959382 |
gaaacatcatgttgcaattaagaaggtttctaaggaatcaaatcaaggagtgaaggaatatgcatctgaagtcaaagtcattagccaattgaggcataag |
36959481 |
T |
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| Q |
307 |
aatttggtccaactctatggctggtgtcacaagcagaatgatctgcttttagtttatgagtttgtggaaaatggaagcttagattcttatattttcaaag |
406 |
Q |
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| T |
36959482 |
aatttggtccaactctatggctggtgtcacaagcagaatgatctgcttttagtttatgagtttgtggaaaatggaagcttagattcttatattttcaaag |
36959581 |
T |
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| Q |
407 |
gaaaag |
412 |
Q |
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|||||| |
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| T |
36959582 |
gaaaag |
36959587 |
T |
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