View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1834_high_9 (Length: 301)

Name: NF1834_high_9
Description: NF1834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1834_high_9
NF1834_high_9
[»] chr4 (5 HSPs)
chr4 (1-156)||(33653131-33653287)
chr4 (195-291)||(33653326-33653422)
chr4 (4-85)||(19351256-19351338)
chr4 (1-84)||(25525777-25525861)
chr4 (4-85)||(33859892-33859974)
[»] chr3 (3 HSPs)
chr3 (1-86)||(13702504-13702589)
chr3 (4-84)||(21791502-21791583)
chr3 (5-84)||(27695652-27695732)
[»] chr2 (4 HSPs)
chr2 (4-87)||(17239718-17239802)
chr2 (4-86)||(35319271-35319354)
chr2 (4-66)||(11146940-11147003)
chr2 (4-86)||(25985169-25985251)
[»] chr1 (3 HSPs)
chr1 (4-115)||(1608170-1608284)
chr1 (30-86)||(8981109-8981165)
chr1 (1-101)||(41098607-41098709)
[»] chr6 (2 HSPs)
chr6 (4-67)||(34805912-34805976)
chr6 (4-86)||(7053962-7054044)
[»] scaffold0008 (1 HSPs)
scaffold0008 (1-86)||(240586-240672)
[»] chr8 (3 HSPs)
chr8 (3-113)||(31430184-31430297)
chr8 (30-86)||(17097474-17097530)
chr8 (4-84)||(41068246-41068326)
[»] chr5 (1 HSPs)
chr5 (1-37)||(36189042-36189079)


Alignment Details
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 33653131 - 33653287
Alignment:
Q  1 tataaaacattaattttcaatctctaaaaaataaattggcataagttcctacacaaaatttccactttagattgcttaacatgt-gctaaagatacaagt 99  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||  ||||||||||||||    
T  33653131 tataaaacattaattttcaatctctaaaaaataaattggcacaaattcctacacaaaattttcactttagattgcttaacatgtccctaaagatacaagt 33653230  T
Q  100 taaaatttcctttatttctattgttgaggagaatgctctcccggcaagacaccaaca 156  Q
    ||  ||||||||||||| ||||| ||||||||||||||||||  |||||| ||||||    
T  33653231 tagcatttcctttatttgtattggtgaggagaatgctctccctacaagacgccaaca 33653287  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 195 - 291
Target Start/End: Original strand, 33653326 - 33653422
Alignment:
Q  195 aagaaagagcatttcattgttattattaagttattccctctnnnnnnnttcgtcaaataatgattatagaannnnnnngttcaacattttgtctctg 291  Q
    |||||||||||||||||||||||||||||||||||||||||       || |||||||||||||||||||        |||||||||||||||||||    
T  33653326 aagaaagagcatttcattgttattattaagttattccctctaaaaaattttgtcaaataatgattatagattttttttgttcaacattttgtctctg 33653422  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 19351338 - 19351256
Alignment:
Q  4 aaaacattaattttcaatctctaaaaaa-taaattggcataagttcctacacaaaatttccactttagattgcttaacatgtg 85  Q
    |||| ||||||||||||||||||||||| ||||||| || || |||||| |||||||||| ||||||| ||  ||||||||||    
T  19351338 aaaatattaattttcaatctctaaaaaaataaattgacagaatttcctaaacaaaatttctactttaggttcattaacatgtg 19351256  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 25525777 - 25525861
Alignment:
Q  1 tataaaacattaattttcaatctctaaaa-aataaattggcataagttcctacacaaaatttccactttagattgcttaacatgt 84  Q
    ||||| ||||||||||||||||| ||||| | ||||||| || || |||||| || ||||||||||| ||| || ||||||||||    
T  25525777 tataacacattaattttcaatctttaaaagattaaattgacacaatttcctaaaccaaatttccactctaggttccttaacatgt 25525861  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 33859974 - 33859892
Alignment:
Q  4 aaaacattaattttcaatctctaaaa-aataaattggcataagttcctacacaaaatttccactttagattgcttaacatgtg 85  Q
    |||||||||||||||||||||||||| |||||||||| | || ||| || |||| |||||  ||||||  | |||||||||||    
T  33859974 aaaacattaattttcaatctctaaaagaataaattggtacaatttcatagacaatatttctgctttaggcttcttaacatgtg 33859892  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 13702589 - 13702504
Alignment:
Q  1 tataaaacattaattttcaatctcta-aaaaataaattggcataagttcctacacaaaatttccactttagattgcttaacatgtgc 86  Q
    |||||||||||||||||||||||||| ||||||||||||||| || |||||  | ||||||||||||||||||| ||||||||||||    
T  13702589 tataaaacattaattttcaatctctagaaaaataaattggcacaatttcctt-ataaaatttccactttagattccttaacatgtgc 13702504  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 21791502 - 21791583
Alignment:
Q  4 aaaacattaattttcaatctcta-aaaaataaattggcataagttcctacacaaaatttccactttagattgcttaacatgt 84  Q
    ||||||||||||||||||||||| || ||||||||| || || ||  || |||||||||| | |||| ||| ||||||||||    
T  21791502 aaaacattaattttcaatctctagaacaataaattgacacaatttattaaacaaaatttctattttaaattccttaacatgt 21791583  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 27695652 - 27695732
Alignment:
Q  5 aaacattaattttcaatctctaa-aaaataaattggcataagttcctacacaaaatttccactttagattgcttaacatgt 84  Q
    |||||||||||||||| |||||| ||||||||||| || || |||||| | | |||||| || ||| ||| ||||||||||    
T  27695652 aaacattaattttcaacctctaacaaaataaattgacacaatttcctaaatataatttctacattaaattccttaacatgt 27695732  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 17239718 - 17239802
Alignment:
Q  4 aaaacattaattttcaatctctaaaa-aataaattggcataagttcctacacaaaatttccactttagattgcttaacatgtgct 87  Q
    |||| ||||||||||||||||||||| ||||||||| ||||| ||| || ||| ||||||||||||||||| |||||||| ||||    
T  17239718 aaaatattaattttcaatctctaaaagaataaattgacataatttcatagacagaatttccactttagattccttaacatatgct 17239802  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 35319354 - 35319271
Alignment:
Q  4 aaaacattaattttcaatctctaaaa-aataaattggcataagttcctacacaaaatttccactttagattgcttaacatgtgc 86  Q
    |||||||||||||| |||||||| || ||||||||| || || |||||| |||||||||||| ||||  || ||||||||||||    
T  35319354 aaaacattaatttttaatctctagaagaataaattgacacaatttcctaaacaaaatttccattttaatttccttaacatgtgc 35319271  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 11147003 - 11146940
Alignment:
Q  4 aaaacattaattttcaatctctaaaa-aataaattggcataagttcctacacaaaatttccact 66  Q
    |||||||||| |||||||||||| || ||||||||| ||| | |||||| ||||||||||||||    
T  11147003 aaaacattaactttcaatctctagaagaataaattgacatgatttcctagacaaaatttccact 11146940  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 25985169 - 25985251
Alignment:
Q  4 aaaacattaattttcaatctctaaaa-aataaattggcataagttcctacacaaaatttccactttagattgcttaacatgtgc 86  Q
    ||||| |||||||||| |||||| || ||||||||| || || ||| || |||||||||||||||||||||  |||||||||||    
T  25985169 aaaaccttaattttcagtctctagaagaataaattgacacaa-ttcttaaacaaaatttccactttagattcattaacatgtgc 25985251  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 1608284 - 1608170
Alignment:
Q  4 aaaacattaattttcaatctctaaaa-aataaattggcataagttcctacacaaaatttccactttagattgcttaacatgtg--ctaaagatacaagtt 100  Q
    ||||||||||||||||||||||  || |||||||||| | || |||| | ||||| |||||||||||| || |||||||||||  |||  ||||||||||    
T  1608284 aaaacattaattttcaatctcttgaagaataaattggtacaatttcccaaacaaagtttccactttaggtttcttaacatgtgtcctagggatacaagtt 1608185  T
Q  101 aaaatttcctttatt 115  Q
    |  ||||||||||||    
T  1608184 agcatttcctttatt 1608170  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 8981165 - 8981109
Alignment:
Q  30 aataaattggcataagttcctacacaaaatttccactttagattgcttaacatgtgc 86  Q
    |||||||||||| || |||||| |||||||||| ||||||||||  |||||||||||    
T  8981165 aataaattggcacaatttcctaaacaaaatttctactttagattctttaacatgtgc 8981109  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 41098607 - 41098709
Alignment:
Q  1 tataaaacattaattttcaatctctaaaa-aataaattggcataagttcctacacaaaatttccactttagattgcttaacatgtg-ctaaagatacaag 98  Q
    ||||||||||||| ||| ||||||||||| ||||||||| || || ||  || | ||||||| |||||||| || ||||||||||| || |||| |||||    
T  41098607 tataaaacattaacttttaatctctaaaagaataaattgacacaattttttagataaaattttcactttaggttccttaacatgtgtcttaagacacaag 41098706  T
Q  99 tta 101  Q
    |||    
T  41098707 tta 41098709  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 34805976 - 34805912
Alignment:
Q  4 aaaacattaattttcaatctctaaaa-aataaattggcataagttcctacacaaaatttccactt 67  Q
    |||||||||||||||| |||||| || ||||||||||||||| || ||| |||||||||||||||    
T  34805976 aaaacattaattttcattctctagaagaataaattggcataattttctaaacaaaatttccactt 34805912  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 7053962 - 7054044
Alignment:
Q  4 aaaacattaattttcaatctct-aaaaaataaattggcataagttcctacacaaaatttccactttagattgcttaacatgtgc 86  Q
    |||||||||||||||||||||| |||||||||||||||  ||  || |  ||||| ||| ||||||||||| ||||||||||||    
T  7053962 aaaacattaattttcaatctctaaaaaaataaattggcgcaatatctttaacaaacttt-cactttagattccttaacatgtgc 7054044  T

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Target: scaffold0008 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 240672 - 240586
Alignment:
Q  1 tataaaacattaattttcaatctctaaa-aaataaattggcataagttcctacacaaaatttccactttagattgcttaacatgtgc 86  Q
    ||||||||||| | ||||||||| || | ||||||||||||| || ||  || |||||| ||| | |||||||||||||||||||||    
T  240672 tataaaacatttactttcaatctttagataaataaattggcacaattttttagacaaaacttctattttagattgcttaacatgtgc 240586  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 31430184 - 31430297
Alignment:
Q  3 taaaacattaattttcaatctctaaaaa-ataaattggcataagttcctacacaaaatttccactttagattgcttaacatgtgc--taaagatacaagt 99  Q
    |||| |||||||||||||| |||||||  |||||||| || || ||| || | |||||||| || |||| || ||||||||||||  |||  | ||||||    
T  31430184 taaagcattaattttcaatatctaaaaggataaattgacacaatttcttaaataaaatttctacattaggttccttaacatgtgccctaagaacacaagt 31430283  T
Q  100 taaaatttccttta 113  Q
    ||||||||||||||    
T  31430284 taaaatttccttta 31430297  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 17097530 - 17097474
Alignment:
Q  30 aataaattggcataagttcctacacaaaatttccactttagattgcttaacatgtgc 86  Q
    |||||||||||| || ||| || |||||||||||  |||||||| ||||||||||||    
T  17097530 aataaattggcacaatttcgtagacaaaatttccggtttagattccttaacatgtgc 17097474  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 41068326 - 41068246
Alignment:
Q  4 aaaacattaattttcaatctctaaaaaataaattggcataagttcctacacaaaatttccactttagattgcttaacatgt 84  Q
    |||||||||||||| ||| |||| || | ||||| ||| || ||| || |||||||||| ||||||| || ||||||||||    
T  41068326 aaaacattaatttttaatttctagaagaaaaattagcacaatttcttagacaaaatttctactttaggttccttaacatgt 41068246  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 36189042 - 36189079
Alignment:
Q  1 tataaaacattaattttcaatctctaaaa-aataaatt 37  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  36189042 tataaaacattaattttcaatctctaaaagaataaatt 36189079  T

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