View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1834_low_1 (Length: 484)
Name: NF1834_low_1
Description: NF1834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1834_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 20 - 311
Target Start/End: Complemental strand, 38831772 - 38831481
Alignment:
| Q |
20 |
tatctgaagttctgaactcggtatattagagactaacgacagaattgactcagaaatgaaaaaatttcaatcgtgcggttctgccttacccctttgcagc |
119 |
Q |
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| T |
38831772 |
tatctgaagttctgaactcggtatattagagactaacgacagaattgactcagaaatgaaaaaatttcaatcgtgcggttctgccttaccccttagcagc |
38831673 |
T |
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| Q |
120 |
tggtcaattcaattatcagaagctcacttcttaacttagaacagtcaaccgatgagtagagaataccattaaacaaaaattaaattaaataaacagggct |
219 |
Q |
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| T |
38831672 |
tggtcaattcaattatcagaagctcacttcttaacttagaacagtcaaccgatgagtagagaataccattaaacaaaaattaaattaaataaacagggct |
38831573 |
T |
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| Q |
220 |
aagtaggatatagaaacaaacaaacatccttgattagtaaaaaatagagctaaattccaacttaagaagcaaaacaatgcaaagtacaagta |
311 |
Q |
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| T |
38831572 |
aagtaggatatagaaacaaacaaacatacttgattagtaaatagtagaactaaattccaacttaagaagcaaaacaatgcaaagtacaagta |
38831481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 330 - 476
Target Start/End: Complemental strand, 38831488 - 38831338
Alignment:
| Q |
330 |
tacaagtaattatcttgatttaacaa----ttaagcaatgtgctcccgatcatgtagtaagagtaaacattaatagtagcaagtttagcaagnnnnnnnc |
425 |
Q |
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| T |
38831488 |
tacaagtaattatcttgatttaacaactaattaagcaatgtgctcccgatcatgtagtaagagtaaacattaatagtagcaagtttagcaagtttttttc |
38831389 |
T |
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| Q |
426 |
caaggttagattgaccccaatccttatacagcgtatttataggcctatgct |
476 |
Q |
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| T |
38831388 |
aaaggttagattgaccccaatccttatacagcgtatttaaaggcctatgct |
38831338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 371 - 417
Target Start/End: Complemental strand, 38818819 - 38818773
Alignment:
| Q |
371 |
ccgatcatgtagtaagagtaaacattaatagtagcaagtttagcaag |
417 |
Q |
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| T |
38818819 |
ccgatcatgtaataagagtaaacattaacagtagcaagtttagcaag |
38818773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 358 - 412
Target Start/End: Complemental strand, 38822974 - 38822920
Alignment:
| Q |
358 |
aagcaatgtgctcccgatcatgtagtaagagtaaacattaatagtagcaagttta |
412 |
Q |
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| T |
38822974 |
aagcaatgtactcccaatcttgtagtaagagtaaacattaacagtagcaagttta |
38822920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 355 - 459
Target Start/End: Complemental strand, 38821064 - 38820960
Alignment:
| Q |
355 |
attaagcaatgtgctcccgatcatgtagtaagagtaaacattaatagtagcaagtttagcaagnnnnnnnccaaggttagattgaccccaatccttatac |
454 |
Q |
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| T |
38821064 |
attaagcaatgtgttcacaatcatataataagagtaaacgttaacagtggcaagtttagcaagttttttgccaagattactttgaccccaatccttaaac |
38820965 |
T |
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| Q |
455 |
agcgt |
459 |
Q |
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||||| |
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| T |
38820964 |
agcgt |
38820960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 417
Target Start/End: Complemental strand, 38814426 - 38814367
Alignment:
| Q |
358 |
aagcaatgtgctcccgatcatgtagtaagagtaaacattaatagtagcaagtttagcaag |
417 |
Q |
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||||||| ||||||| ||| |||| ||||| |||||||||| |||||||||||| ||||| |
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| T |
38814426 |
aagcaatttgctcccaatcttgtaataagaataaacattaacagtagcaagtttggcaag |
38814367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 417
Target Start/End: Original strand, 17198115 - 17198149
Alignment:
| Q |
383 |
taagagtaaacattaatagtagcaagtttagcaag |
417 |
Q |
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| T |
17198115 |
taagagtaaacattaacagtagcaagtttagcaag |
17198149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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