View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1834_low_17 (Length: 235)
Name: NF1834_low_17
Description: NF1834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1834_low_17 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 37787904 - 37787684
Alignment:
| Q |
16 |
acttcttcatcctagcttgaagttcaagtttgaatcatgatcaagatttagagaa--gactcattgcttgaattggatatattgatattggtttggttga |
113 |
Q |
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| T |
37787904 |
acttcttcatcctaacttgaagttcaagtttgaatcatgatcaagatttagagaatggaatcattacttgaattggatatattgatattggtttggttga |
37787805 |
T |
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| Q |
114 |
tgttttgatctaataattctcatagttttgttatgtatgttttttcccaattcctatatttttctgagcaaattcatgttactgcccatttatctatttt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37787804 |
tgttttgatctaataattctcatagttttgttatgtatgttttt-cccaattcctatatttttctgagcaaattcatgttactgcccatttatctatttt |
37787706 |
T |
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| Q |
214 |
tagcaacttagtactagtgtcc |
235 |
Q |
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|||||||||||||||||||||| |
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| T |
37787705 |
tagcaacttagtactagtgtcc |
37787684 |
T |
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