View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1834_low_19 (Length: 235)
Name: NF1834_low_19
Description: NF1834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1834_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 45480137 - 45479915
Alignment:
| Q |
1 |
ttcattttaccttgcacaccttgaagatccaaccactcgaaagcaggaagaaaatcaccaatattgaaaacaccagccaataccataagttcaaccacca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45480137 |
ttcattttaccttgcacaccttgaagatccaaccactcgaaagcaggaagaaaatcaccaatattgaaaacaccagccaataccataagttcaacaacca |
45480038 |
T |
|
| Q |
101 |
tagacttaaactcatcagccctaggatcacattcatacccaccattcccctcattaaatactcgccgtcctatcattaccctagccaatgcgtttgtcgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45480037 |
tagacttaaactcatcagccctaggatcacattcacacccaccattcccctcattaaatactcgccgtcctatcattaccctagccaatgcgtttgtcgt |
45479938 |
T |
|
| Q |
201 |
gcatacattcaacatttgtccta |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
45479937 |
gcatacattcaacatttgtccta |
45479915 |
T |
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