View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1834_low_21 (Length: 234)

Name: NF1834_low_21
Description: NF1834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1834_low_21
NF1834_low_21
[»] chr4 (15 HSPs)
chr4 (6-219)||(3821527-3821740)
chr4 (1-219)||(4011742-4011960)
chr4 (13-218)||(3811955-3812160)
chr4 (1-219)||(3952926-3953142)
chr4 (1-219)||(4026499-4026717)
chr4 (8-219)||(4003263-4003474)
chr4 (10-219)||(3915891-3916100)
chr4 (12-219)||(3926887-3927094)
chr4 (9-219)||(4220765-4220975)
chr4 (9-214)||(3988157-3988362)
chr4 (14-183)||(3962331-3962500)
chr4 (14-183)||(4019575-4019744)
chr4 (46-183)||(3825818-3825955)
chr4 (44-172)||(3792676-3792804)
chr4 (68-129)||(4318238-4318299)
[»] chr5 (1 HSPs)
chr5 (7-219)||(13399104-13399316)
[»] chr8 (2 HSPs)
chr8 (90-183)||(7069945-7070038)
chr8 (89-183)||(7087011-7087105)


Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 6 - 219
Target Start/End: Complemental strand, 3821740 - 3821527
Alignment:
Q  6 gccacggctttcttagccatttggttaaggcttttcctcgaaagcaaataaatgcctttgttgatgagaaacttaagaggggagatgacatatcacattc 105  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||| ||||||||||||||||||||||||    
T  3821740 gccacagctttcttagccatttggttaaggcttttcctcgaaagcaaataaatgcctttgttgatgacgcacttacgaggggagatgacatatcacattc 3821641  T
Q  106 attttttgaagcaattgaaggatcttccatttcattggtcatattctcagaaaactatgctttttcaagttggtgtttnnnnnnncttgtgaaaataatt 205  Q
    | ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||  |||||||||       ||||||||||||||     
T  3821640 actttttgaagcaattgaaggatctcccatttcattggtcatattctcaaaaaactatgcttcttcacattggtgtttagatgagcttgtgaaaataatc 3821541  T
Q  206 gagtgcaaagagaa 219  Q
    ||||||||||||||    
T  3821540 gagtgcaaagagaa 3821527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 4011960 - 4011742
Alignment:
Q  1 catctgccacggctttcttagccatttggttaaggcttttcctcgaaagcaaataaatgcctttgttgatgagaaacttaagaggggagatgacatatca 100  Q
    |||| ||||||| ||| || ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  4011960 catccgccacggattttttggccatttggttatcgcttttcctcgaaagcaaataaatgcctttgttgatgagaaacttaagaggggagatgacatgtca 4011861  T
Q  101 cattcattttttgaagcaattgaaggatcttccatttcattggtcatattctcagaaaactatgctttttcaagttggtgtttnnnnnnncttgtgaaaa 200  Q
    |||||| || |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||  |||||||||       |||| |||||    
T  4011860 cattcacttgttgaagcaattgaaggatctcccatttcattggtcatattctcataaaactatgcttgttcacattggtgtttagaagaacttgcgaaaa 4011761  T
Q  201 taattgagtgcaaagagaa 219  Q
    |||||||||||||||||||    
T  4011760 taattgagtgcaaagagaa 4011742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 3812160 - 3811955
Alignment:
Q  13 ctttcttagccatttggttaaggcttttcctcgaaagcaaataaatgcctttgttgatgagaaacttaagaggggagatgacatatcacattcatttttt 112  Q
    ||||||||||||||||| | |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |     
T  3812160 ctttcttagccatttggctgaggctttttctcgaaagcaaataaatgcctttcttgatgagaaacttaagaggggagatgacatatcacattcacttgta 3812061  T
Q  113 gaagcaattgaaggatcttccatttcattggtcatattctcagaaaactatgctttttcaagttggtgtttnnnnnnncttgtgaaaataattgagtgca 212  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||  |||||||||       ||||||||||||||||||||||    
T  3812060 gaagcaatggaaggatctcccatttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagatgagcttgtgaaaataattgagtgca 3811961  T
Q  213 aagaga 218  Q
    ||||||    
T  3811960 aagaga 3811955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 3952926 - 3953142
Alignment:
Q  1 catctgccacggctttcttagccatttggttaaggcttttcctcgaaagcaaataaatgcctttgttgatgagaaacttaagaggggagatgacatatca 100  Q
    |||| |||||||||||||| | ||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||      
T  3952926 catccgccacggctttcttggtcatttggctaaggcttttcctcaaaagcaaataaatgcctttgttgatgacaaacttaagaggggagatgacatat-- 3953023  T
Q  101 cattcattttttgaagcaattgaaggatcttccatttcattggtcatattctcagaaaactatgctttttcaagttggtgtttnnnnnnncttgtgaaaa 200  Q
    |||||| |||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||| |||| ||||||||||       ||||||||||    
T  3953024 cattcaatttttgaagcaattgaaggatcgttcatttcattgatcatattctcagaaaactatgcttcttcacgttggtgtttagaagaacttgtgaaaa 3953123  T
Q  201 taattgagtgcaaagagaa 219  Q
    |||||||||||| ||||||    
T  3953124 taattgagtgcagagagaa 3953142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 4026717 - 4026499
Alignment:
Q  1 catctgccacggctttcttagccatttggttaaggcttttcctcgaaagcaaataaatgcctttgttgatgagaaacttaagaggggagatgacatatca 100  Q
    |||| |||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||     
T  4026717 catccgccacggctttcttggccatttggctaaggctttttctcgaaagcaaataaatgcctttgttgatgacaaacttaagaggggagatgacatatcg 4026618  T
Q  101 cattcattttttgaagcaattgaaggatcttccatttcattggtcatattctcagaaaactatgctttttcaagttggtgtttnnnnnnncttgtgaaaa 200  Q
     ||||| || | |||||||| |||||||| | |||||||||| |||||||||||||||||||||||| |||||||||||||||       ||| ||||||    
T  4026617 aattcacttgtagaagcaatagaaggatcattcatttcattgatcatattctcagaaaactatgcttcttcaagttggtgtttagaagaacttttgaaaa 4026518  T
Q  201 taattgagtgcaaagagaa 219  Q
    ||||||| |||||||||||    
T  4026517 taattgattgcaaagagaa 4026499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 8 - 219
Target Start/End: Complemental strand, 4003474 - 4003263
Alignment:
Q  8 cacggctttcttagccatttggttaaggcttttcctcgaaagcaaataaatgcctttgttgatgagaaacttaagaggggagatgacatatcacattcat 107  Q
    ||||| |||||| |||||||| |||| ||||||||||| || |||||||||||||||||||| || |||||||||||||||||||| ||||||||| ||     
T  4003474 cacggatttcttggccatttgattaaagcttttcctcgtaaacaaataaatgcctttgttgacgaaaaacttaagaggggagatgatatatcacatgcac 4003375  T
Q  108 tttttgaagcaattgaaggatcttccatttcattggtcatattctcagaaaactatgctttttcaagttggtgtttnnnnnnncttgtgaaaataattga 207  Q
    || | ||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||  |||||||||       |||||||||||||||||    
T  4003374 ttgtagaagcaattgaaggatcattcatttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagaagaacttgtgaaaataattga 4003275  T
Q  208 gtgcaaagagaa 219  Q
    ||||||||||||    
T  4003274 gtgcaaagagaa 4003263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 10 - 219
Target Start/End: Original strand, 3915891 - 3916100
Alignment:
Q  10 cggctttcttagccatttggttaaggcttttcctcgaaagcaaataaatgcctttgttgatgagaaacttaagaggggagatgacatatcacattcattt 109  Q
    |||||||||||||||||||||||||||||||  || ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||| ||    
T  3915891 cggctttcttagccatttggttaaggctttttgtcaaaagcaaataaatgcttttgttgatgacaaacttaagaggggagatgacatatcagattcactt 3915990  T
Q  110 tttgaagcaattgaaggatcttccatttcattggtcatattctcagaaaactatgctttttcaagttggtgtttnnnnnnncttgtgaaaataattgagt 209  Q
      ||||||||| |||||||| | |||||||||| |||||||||||||||||||||||| ||||  |||||||||       |||||||||||| ||||||    
T  3915991 ggtgaagcaatcgaaggatcattcatttcattgatcatattctcagaaaactatgcttgttcacattggtgtttaaaagaacttgtgaaaatagttgagt 3916090  T
Q  210 gcaaagagaa 219  Q
    | ||||||||    
T  3916091 gtaaagagaa 3916100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 3926887 - 3927094
Alignment:
Q  12 gctttcttagccatttggttaaggcttttcctcgaaagcaaataaatgcctttgttgatgagaaacttaagaggggagatgacatatcacattcattttt 111  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||| |||||| | |||||||||||||||||| ||||| || |    
T  3926887 gctttcttagccatttggttaaggcttttcttcaaaagcaaataaatgcttttgttgatgacaaacttcacaggggagatgacatatcagattcacttgt 3926986  T
Q  112 tgaagcaattgaaggatcttccatttcattggtcatattctcagaaaactatgctttttcaagttggtgtttnnnnnnncttgtgaaaataattgagtgc 211  Q
    |||||||||  ||||||| |||||||  ||| ||||||| |||||||| ||||||| ||||  |||||||||       |||||||||||| |||||||     
T  3926987 tgaagcaatcaaaggatcatccattttgttgatcatattttcagaaaaatatgcttgttcacattggtgtttagaagaacttgtgaaaatagttgagtgt 3927086  T
Q  212 aaagagaa 219  Q
    ||||||||    
T  3927087 aaagagaa 3927094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 219
Target Start/End: Complemental strand, 4220975 - 4220765
Alignment:
Q  9 acggctttcttagccatttggttaaggcttttcctcgaaagcaaataaatgcctttgttgatgagaaacttaagaggggagatgacatatcacattcatt 108  Q
    ||||||||||| || | |||  | ||||||||  |||||| |||||||||  |||||||||| | ||||||||||  ||||||||||||||||||||| |    
T  4220975 acggctttcttggcaaattgtatgaggcttttattcgaaaacaaataaatatctttgttgattacaaacttaagaaaggagatgacatatcacattcact 4220876  T
Q  109 ttttgaagcaattgaaggatcttccatttcattggtcatattctcagaaaactatgctttttcaagttggtgtttnnnnnnncttgtgaaaataattgag 208  Q
    |  |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||  |||||||||       ||||| ||||||||||||    
T  4220875 tggtgaagcaattgaaggatcatccatttcattggtcatattctctgaaaactatgcttcttcacattggtgtttagaagaacttgtaaaaataattgag 4220776  T
Q  209 tgcaaagagaa 219  Q
    |||| ||||||    
T  4220775 tgcagagagaa 4220765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 214
Target Start/End: Complemental strand, 3988362 - 3988157
Alignment:
Q  9 acggctttcttagccatttggttaaggcttttcctcgaaagcaaataaatgcctttgttgatgagaaacttaagaggggagatgacatatcacattcatt 108  Q
    ||||||||||| ||||||||||||||||||||| || |||| ||||||||| |||||| ||  | | | |||||||||||||||| ||   ||||||| |    
T  3988362 acggctttcttggccatttggttaaggcttttcgtcaaaagaaaataaatgtctttgtagacaacataattaagaggggagatgaaatcaaacattcact 3988263  T
Q  109 ttttgaagcaattgaaggatcttccatttcattggtcatattctcagaaaactatgctttttcaagttggtgtttnnnnnnncttgtgaaaataattgag 208  Q
    | |||||||||||||||| || |  ||||||||||||||||||||| |||| ||| ||| ||||  |||||||||       |||||||||||||| |||    
T  3988262 tgttgaagcaattgaaggctcgttaatttcattggtcatattctcaaaaaattattcttcttcacattggtgtttagatgaacttgtgaaaataatcgag 3988163  T
Q  209 tgcaaa 214  Q
    ||||||    
T  3988162 tgcaaa 3988157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 183
Target Start/End: Original strand, 3962331 - 3962500
Alignment:
Q  14 tttcttagccatttggttaaggcttttcctcgaaagcaaataaatgcctttgttgatgagaaacttaagaggggagatgacatatcacattcattttttg 113  Q
    |||||||| |||||| || ||| ||||  ||||||| ||||||| |||||||| ||||| |||||||||||||||||||| ||| |||| ||| || |      
T  3962331 tttcttagtcatttgattgaggattttgatcgaaagaaaataaaagcctttgtagatgataaacttaagaggggagatgaaataccacaatcacttgtca 3962430  T
Q  114 aagcaattgaaggatcttccatttcattggtcatattctcagaaaactatgctttttcaagttggtgttt 183  Q
     ||||||||||||||| |  ||||| ||| ||||||| ||| |  ||||||||| |||| ||||||||||    
T  3962431 gagcaattgaaggatcgttaatttccttgatcatattttcacacgactatgcttcttcatgttggtgttt 3962500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 183
Target Start/End: Complemental strand, 4019744 - 4019575
Alignment:
Q  14 tttcttagccatttggttaaggcttttcctcgaaagcaaataaatgcctttgttgatgagaaacttaagaggggagatgacatatcacattcattttttg 113  Q
    ||||||||||||||| || ||||||| | ||||||| ||||||| ||||||||||||||  | ||||||||||||||||| |||  ||| ||| || |      
T  4019744 tttcttagccatttgattgaggctttacgtcgaaagaaaataaaagcctttgttgatgatgagcttaagaggggagatgaaatactacaatcacttgtca 4019645  T
Q  114 aagcaattgaaggatcttccatttcattggtcatattctcagaaaactatgctttttcaagttggtgttt 183  Q
     || |||||||||||| |  ||||| ||| ||||||||||| || ||||||||| |||| | ||||||||    
T  4019644 gaggaattgaaggatcattaatttccttgatcatattctcacaagactatgcttcttcacgctggtgttt 4019575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 183
Target Start/End: Complemental strand, 3825955 - 3825818
Alignment:
Q  46 aaagcaaataaatgcctttgttgatgagaaacttaagaggggagatgacatatcacattcattttttgaagcaattgaaggatcttccatttcattggtc 145  Q
    |||| ||||||| ||||||||||||||  ||||||||||||||||||| ||| |||| ||| || |   || || ||||||||| |  ||||| ||| ||    
T  3825955 aaaggaaataaaagcctttgttgatgatgaacttaagaggggagatgaaataccacaatcacttgtaagaggaaatgaaggatcattaatttccttgatc 3825856  T
Q  146 atattctcagaaaactatgctttttcaagttggtgttt 183  Q
    ||||||||| || ||||||||| |||| ||||||||||    
T  3825855 atattctcacaagactatgcttcttcatgttggtgttt 3825818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 172
Target Start/End: Complemental strand, 3792804 - 3792676
Alignment:
Q  44 cgaaagcaaataaatgcctttgttgatgagaaacttaagaggggagatgacatatcacattcattttttgaagcaattgaaggatcttccatttcattgg 143  Q
    |||||| ||||||| ||||||||||||||  ||||||||||||||||||| ||| |||| ||| || |   || || ||||||||| |  ||||| |||     
T  3792804 cgaaaggaaataaaagcctttgttgatgatgaacttaagaggggagatgaaataccacaatcacttgtaagaggaaatgaaggatcattaatttccttga 3792705  T
Q  144 tcatattctcagaaaactatgctttttca 172  Q
    ||||||||||| || ||||||||| ||||    
T  3792704 tcatattctcacaagactatgcttcttca 3792676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 4318238 - 4318299
Alignment:
Q  68 gatgagaaacttaagaggggagatgacatatcacattcattttttgaagcaattgaaggatc 129  Q
    ||||| || ||||||||||| ||||| ||||||||||||||| ||||||||||| |||||||    
T  4318238 gatgacaagcttaagaggggggatgaaatatcacattcatttgttgaagcaattaaaggatc 4318299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 7 - 219
Target Start/End: Complemental strand, 13399316 - 13399104
Alignment:
Q  7 ccacggctttcttagccatttggttaaggcttttcctcgaaagcaaataaatgcctttgttgatgagaaacttaagaggggagatgacatatcacattca 106  Q
    ||||||||||||| |||||||| ||||||||||| ||| |||||||||||||| ||||||||| || ||||||||||||||| |||||||||||||||||    
T  13399316 ccacggctttcttggccatttgtttaaggctttttctcaaaagcaaataaatgtctttgttgacgacaaacttaagaggggaaatgacatatcacattca 13399217  T
Q  107 ttttttgaagcaattgaaggatcttccatttcattggtcatattctcagaaaactatgctttttcaagttggtgtttnnnnnnncttgtgaaaataattg 206  Q
     ||||||||||||| |||||||| |  ||||||||| |||||||||||||||||||||||| |||| ||||||||||       ||||||||||||||||    
T  13399216 ctttttgaagcaatcgaaggatcatttatttcattgatcatattctcagaaaactatgcttcttcacgttggtgtttagaagaacttgtgaaaataattg 13399117  T
Q  207 agtgcaaagagaa 219  Q
    |||||||||||||    
T  13399116 agtgcaaagagaa 13399104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 90 - 183
Target Start/End: Complemental strand, 7070038 - 7069945
Alignment:
Q  90 atgacatatcacattcattttttgaagcaattgaaggatcttccatttcattggtcatattctcagaaaactatgctttttcaagttggtgttt 183  Q
    |||| |||||||| ||| |||||||||||||||||  |||||| |||||||| |||||||||||  |||||||||||| ||||  |||||||||    
T  7070038 atgaaatatcacagtcactttttgaagcaattgaaacatcttcaatttcattagtcatattctctcaaaactatgcttcttcatcttggtgttt 7069945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 89 - 183
Target Start/End: Complemental strand, 7087105 - 7087011
Alignment:
Q  89 gatgacatatcacattcattttttgaagcaattgaaggatcttccatttcattggtcatattctcagaaaactatgctttttcaagttggtgttt 183  Q
    ||||| ||| |||| ||| |||||||||| ||||||  |||||| |||||||| |||||||||||  |||||||||||| |||||  ||||||||    
T  7087105 gatgaaatagcacaatcactttttgaagctattgaaacatcttcaatttcattagtcatattctctcaaaactatgcttcttcaaaatggtgttt 7087011  T

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