View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1834_low_25 (Length: 225)
Name: NF1834_low_25
Description: NF1834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1834_low_25 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 23 - 225
Target Start/End: Complemental strand, 26048644 - 26048442
Alignment:
| Q |
23 |
gtttcatcttcactggcccgtgtaacgctaagaacgactcgaatagaaagatccctttgattcttatagacaccattaaccatatcccgagcacacttga |
122 |
Q |
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| T |
26048644 |
gtttcatcttcactggcccgtgtaacgctaagaacgactcgaatagaaagatccctttgattcttatagacaccattaaccatatcccgagcacacttga |
26048545 |
T |
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| Q |
123 |
aaatatctgccactacatacctaaaagcatcttcgggaacatccatttgagaaagccatgatacaatggtactttcttgcattagttgatccttagagac |
222 |
Q |
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| T |
26048544 |
aaatatctgccactacatacctaaaagcatcttcgggaacatccatttgagaaagccatgatacaatggtactttcttgcattagttgatccttagagac |
26048445 |
T |
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| Q |
223 |
att |
225 |
Q |
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||| |
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| T |
26048444 |
att |
26048442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 26 - 225
Target Start/End: Complemental strand, 26042340 - 26042141
Alignment:
| Q |
26 |
tcatcttcactggcccgtgtaacgctaagaacgactcgaatagaaagatccctttgattcttatagacaccattaaccatatcccgagcacacttgaaaa |
125 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
26042340 |
tcatcttcactggcccttgtaatgctaagaacgactcgaatagaaagaaccctttgattcttatagacaccattaaccatatctcgagcacacttgaaaa |
26042241 |
T |
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| Q |
126 |
tatctgccactacatacctaaaagcatcttcgggaacatccatttgagaaagccatgatacaatggtactttcttgcattagttgatccttagagacatt |
225 |
Q |
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| T |
26042240 |
tatctgcaactacatacctaaaagcatcttcgggaacatccatttgagaaagccatgatacaatggtgctttcttgcattatttgatccttagagacatt |
26042141 |
T |
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