View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1834_low_28 (Length: 214)
Name: NF1834_low_28
Description: NF1834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1834_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 116; Significance: 3e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 32598271 - 32598450
Alignment:
| Q |
17 |
tattcattcaatatctctacccaaaattaggttgttacttaggtatgagatcaacggggctttattaccatcttttctgttgaatacttaatatctatca |
116 |
Q |
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| T |
32598271 |
tattcattcaatatctccacccaaaattaggttgttacttaggtatgagatcaaatgggctttattaccatcttttgtgttgaatacttaatatctatca |
32598370 |
T |
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| Q |
117 |
cgtttta-tttttnnnnnnnntattatgtattcaacaccaaagatgataaatacatgctagatattaagtgcactaaagt |
195 |
Q |
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| T |
32598371 |
cgttttattttttaaaaaaaatattatgtattcaacacaaaaaatggtaaatacatgctagatattaagtgcattaaagt |
32598450 |
T |
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Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 32603422 - 32603517
Alignment:
| Q |
17 |
tattcattcaatatctctacccaaaattaggttgttacttaggtatgagatcaacggggctttattaccatcttttctgttgaatacttaatatcta |
113 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| || |||||| | |||||| ||||||||||||| | ||||||||||||||||| |
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| T |
32603422 |
tattcattcaatatatctacccaaaattaggttgttacttgggcatgaga-cctgtgggcttcattaccatcttttgtaatgaatacttaatatcta |
32603517 |
T |
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