View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1834_low_3 (Length: 443)
Name: NF1834_low_3
Description: NF1834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1834_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 35 - 243
Target Start/End: Complemental strand, 50718027 - 50717819
Alignment:
| Q |
35 |
catagggttgatgtgtaggacttgaaagtataacatagaaagtggacctttatgttgttgaaaaggtgccataaaccaattacaaagaaagcaaacccta |
134 |
Q |
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| T |
50718027 |
catagggttgatgtgtaggacttgaaagtataacatagaaagtggagctttatgttgttgaaaaggtgccataaaccaattacaaagaaagcaaacccta |
50717928 |
T |
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| Q |
135 |
aaatttcatgtccctccatagtgcctagctattaggtaaaaacacaacacacgaaaaagaattatttagctaagtcaatgtccttgtgtcaccaatagca |
234 |
Q |
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| T |
50717927 |
aaatttcatgtccctccatagtgcctagctattaggtaaaaacacaacacacgaaaaagaattatttagctaagtcaatgtccttgtgtcaccaatagca |
50717828 |
T |
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| Q |
235 |
atgttaagc |
243 |
Q |
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| T |
50717827 |
atgttaagc |
50717819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 278 - 426
Target Start/End: Complemental strand, 50717819 - 50717663
Alignment:
| Q |
278 |
ctctaaaataaaagatgatttatagagttggctctttaatttgtgtatcaaagatattaattatgagggataaa-------------gttggttgaggtg |
364 |
Q |
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| T |
50717819 |
ctctaaaataaaagatgatttatagagttggctcttt-----gtgtatcaaagatattaattatgagggataaataatggggatgaagttggttgaggtg |
50717725 |
T |
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| Q |
365 |
aggatatatagaatgcaagtgtccgtcgtatatgagagatcacaaaggacaagacatgaaac |
426 |
Q |
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| T |
50717724 |
aggatatatagaatgcaagtgtccgtcgtatatgagagatcacaaaggacaagacatgaaac |
50717663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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