View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1834_low_5 (Length: 393)
Name: NF1834_low_5
Description: NF1834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1834_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 147 - 377
Target Start/End: Original strand, 7623691 - 7623917
Alignment:
| Q |
147 |
tttattctcttatataaaattcgaatgagtattaattttcaggttacaaaatgatgtgactctcgtataaatgacattgatagtgcaacttatgttgaaa |
246 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7623691 |
tttattctcttagataaaattcaaatgagtattaattttcaggttacaaaatgatgtgactctcgtataaatgacattgatagtgcaacttatgttgaaa |
7623790 |
T |
|
| Q |
247 |
ttgagaaaatgatattaattaactaactaacctgacgcaagtgtttgaattcttccatgactttgttggagaagagatgaactgaggagatttttcggag |
346 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7623791 |
ttgagaaaatgatattaat----taactaacctgacgcaagtgtttgaattcttccatgactttgttggagaagagatgaacggaggagatttttcggag |
7623886 |
T |
|
| Q |
347 |
cattcgccaccgtggaccataaggtgcaaac |
377 |
Q |
| |
|
||||||||||| ||||||||||| |||||| |
|
|
| T |
7623887 |
cattcgccacctcggaccataaggggcaaac |
7623917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 237 - 377
Target Start/End: Complemental strand, 7659908 - 7659768
Alignment:
| Q |
237 |
tatgttgaaattgagaaaatgatattaattaactaactaacctgacgcaagtgtttgaattcttccatgactttgttggagaagagatgaactgaggaga |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7659908 |
tatgttgaaattgagaaaatgatattaattaactaactaacctgacgcaagtgtttgaattcttccatgactttgtttgagaagagatgaactgaggaga |
7659809 |
T |
|
| Q |
337 |
tttttcggagcattcgccaccgtggaccataaggtgcaaac |
377 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7659808 |
tttttcggagcattcgccaccgcggaccataaggtgcaaac |
7659768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 7623391 - 7623530
Alignment:
| Q |
10 |
attatactcaagtcaatataaccaaaacttgttcatgactaaaaacacatactagctccttgaagatgcaaaacagcagtttgtattttcagaaaaatgt |
109 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7623391 |
attatactcaagtcaatataagcaaaacttgttcatgactaaaaacacatactagctccttgaagatgcaaaacagcagtttgtattttcagaaaaatgt |
7623490 |
T |
|
| Q |
110 |
gaatactatatttttaatttaattttctgggaagattttt |
149 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
7623491 |
gaatactatatttttaatttaattttctcggaagattttt |
7623530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 370
Target Start/End: Complemental strand, 7675502 - 7675402
Alignment:
| Q |
270 |
taactaacctgacgcaagtgtttgaattcttccatgactttgttggagaagagatgaactgaggagatttttcggagcattcgccaccgtggaccataag |
369 |
Q |
| |
|
|||||||||||||| | |||||| ||||| |||| | || |||||||||||| ||||| | | |||||||| ||| | |||||||| ||||||||||| |
|
|
| T |
7675502 |
taactaacctgacgtaggtgtttaaattcatccaaggattggttggagaagaggtgaacagtagtgatttttctgagtagtcgccaccttggaccataag |
7675403 |
T |
|
| Q |
370 |
g |
370 |
Q |
| |
|
| |
|
|
| T |
7675402 |
g |
7675402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University