View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18350_high_1 (Length: 396)
Name: NF18350_high_1
Description: NF18350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18350_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 16 - 381
Target Start/End: Complemental strand, 32101658 - 32101294
Alignment:
| Q |
16 |
caatataagccgaaagaaaagagaaactactacggctatggaagcaattcttaatgtcaacattaaacagtttatagacacaatcaaaaaagctttgatt |
115 |
Q |
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|||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||| |||||||| |
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| T |
32101658 |
caatataagctgaaagaaaagagaaactactacagctatggaagcaatttttaatgtcaacattaaacaatttatagacacaatcaacaaa-ctttgatt |
32101560 |
T |
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| Q |
116 |
acaactataataactattgtgcttgatttaataaatattcttgaatgttagtctaatttaattttcataaaaacaaaagccagcactagaacacatatta |
215 |
Q |
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| T |
32101559 |
atgactataataattaatgtgcttgatttaataaatattcttgaatgttaggcaaatttaattttcttaaaaacaaaagcaagcactagaacacatattt |
32101460 |
T |
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| Q |
216 |
acctaattaattacaacatagaagaagattaatactataagaagtattacaggagctacaaaaacaaaatattgaccaaaaaagatgaatgacacgaaaa |
315 |
Q |
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||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32101459 |
acctacttaattacaacacagaagaagattaatactataagaagtattacaggagctacaaaaacaaaatattgaccaaaaaagatgaatgacacgaaaa |
32101360 |
T |
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| Q |
316 |
tgaggaccgggagtattaacactcatggattaaattcaccaatatcacaagcttggctggtctctg |
381 |
Q |
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| T |
32101359 |
tgaggactaggagtatcaacactcgtggattaaattcaccaatatcacaagcttgactggtctctg |
32101294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 381
Target Start/End: Complemental strand, 32103245 - 32102881
Alignment:
| Q |
16 |
caatataagccgaaagaaaagagaaactactacggctatggaagcaattcttaatgtcaacattaaacagtttatagacacaatcaaaaaagctttgatt |
115 |
Q |
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|||||||||| |||||||| |||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
32103245 |
caatataagctgaaagaaacgagaaactacaacggctatggaaacaattctcaatgtcaacattaaacagtttatagacacaatcgaaattt-tttgatt |
32103147 |
T |
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| Q |
116 |
acaactataataactattgtgcttgatttaataaatattcttgaatgttagtctaatttaattttcataaaaacaaaagccagcactagaacacatatta |
215 |
Q |
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| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
32103146 |
atgactataataattattgtgcttgatttgataaatattcttgaatgttagtctaatttaattttcttaaaaacaaaagcaagcactagaacacatatta |
32103047 |
T |
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| Q |
216 |
acctaattaattacaacatagaagaagattaatactataagaagtattacaggagctacaaaaacaaaatattgaccaaaaaagatgaatgacacgaaaa |
315 |
Q |
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||||| |||||||||||| | ||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||| ||||| |||||||||| |
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| T |
32103046 |
acctacttaattacaacacataagaagattaatattataagaagtattacaggatctacaaaaacaaaatattgatcaaaaaatatgaaggacacgaaaa |
32102947 |
T |
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| Q |
316 |
tgaggaccgggagtattaacactcatggattaaattcaccaatatcacaagcttggctggtctctg |
381 |
Q |
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||||||| ||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||| |
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| T |
32102946 |
tgaggactaggagtattaacactcgtggattaaattcaccaatatcacaagtttggttggtctctg |
32102881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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