View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18350_high_3 (Length: 353)

Name: NF18350_high_3
Description: NF18350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18350_high_3
NF18350_high_3
[»] chr8 (4 HSPs)
chr8 (11-340)||(29846509-29846839)
chr8 (111-160)||(21397237-21397286)
chr8 (111-160)||(21791730-21791779)
chr8 (199-227)||(9801445-9801473)
[»] chr5 (4 HSPs)
chr5 (104-160)||(10321637-10321693)
chr5 (110-161)||(36975925-36975976)
chr5 (111-160)||(32064466-32064515)
chr5 (110-163)||(36975234-36975287)
[»] chr4 (1 HSPs)
chr4 (104-163)||(41206462-41206521)
[»] chr1 (2 HSPs)
chr1 (88-160)||(32623213-32623286)
chr1 (198-227)||(36481135-36481164)


Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 11 - 340
Target Start/End: Complemental strand, 29846839 - 29846509
Alignment:
Q  11 aataattgagtcaggaaccatccaaaaatctgttagaattttagctcataaggataacttaatttaaaaggctgctttattagatgggagaattcatgtc 110  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  29846839 aataattgagtcaggaaccgtctaaaaatctgttagaattttagctcataaagataacttaatttaaaaggttgctttattagataggagaattcatgtc 29846740  T
Q  111 ttaaataccacatcaaatacttttatctatttgacgtgggactcctaacacaaagaaactcgagttctctcaaataagtcgtatttaatgaagctcatta 210  Q
    |||||||  ||||||||||||||||||||||||| ||| ||||||||||| ||  ||||| |||||||||||||||| |  |||||| ||||| | ||||    
T  29846739 ttaaatattacatcaaatacttttatctatttgatgtgagactcctaacagaatcaaacttgagttctctcaaataatttatatttagtgaagtttatta 29846640  T
Q  211 accacttgagttcaattccttggttataattgattgtatttgtgaattgtgacattgtgttataacacataaaaaatattacctct-nnnnnnncacaca 309  Q
    |||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||        ||||||    
T  29846639 accacttgagtttaattacttggttataattgattgtattcgtgaattgtgacattgtgttataacacataaaacttattacctctaaaaaaaacacaca 29846540  T
Q  310 ttaagcatatgaactatgtatttgagcttct 340  Q
    |||||||||||||||||||||||||||||||    
T  29846539 ttaagcatatgaactatgtatttgagcttct 29846509  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 21397286 - 21397237
Alignment:
Q  111 ttaaataccacatcaaatacttttatctatttgacgtgggactcctaaca 160  Q
    ||||||||||||||||  ||||||||||| | ||||||||||||||||||    
T  21397286 ttaaataccacatcaatcacttttatctactcgacgtgggactcctaaca 21397237  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 21791779 - 21791730
Alignment:
Q  111 ttaaataccacatcaaatacttttatctatttgacgtgggactcctaaca 160  Q
    ||||||||||||||||  ||||||||||| | ||||||||||||||||||    
T  21791779 ttaaataccacatcaatcacttttatctactcgacgtgggactcctaaca 21791730  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 227
Target Start/End: Original strand, 9801445 - 9801473
Alignment:
Q  199 tgaagctcattaaccacttgagttcaatt 227  Q
    |||||||||||||||||||||||||||||    
T  9801445 tgaagctcattaaccacttgagttcaatt 9801473  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 10321637 - 10321693
Alignment:
Q  104 tcatgtcttaaataccacatcaaatacttttatctatttgacgtgggactcctaaca 160  Q
    ||||| ||||| |||||||||||| |||||||| ||| ||| |||||||||||||||    
T  10321637 tcatggcttaagtaccacatcaaacacttttatttatctgatgtgggactcctaaca 10321693  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 36975976 - 36975925
Alignment:
Q  110 cttaaataccacatcaaatacttttatctatttgacgtgggactcctaacac 161  Q
    |||||||||||||||||| ||||| ||||| | || ||||||||||||||||    
T  36975976 cttaaataccacatcaaacactttgatctactcgatgtgggactcctaacac 36975925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 160
Target Start/End: Original strand, 32064466 - 32064515
Alignment:
Q  111 ttaaataccacatcaaatacttttatctatttgacgtgggactcctaaca 160  Q
    ||||||||||||||||| |||||||| ||||||| | | |||||||||||    
T  32064466 ttaaataccacatcaaacacttttatttatttgatgcgtgactcctaaca 32064515  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 163
Target Start/End: Complemental strand, 36975287 - 36975234
Alignment:
Q  110 cttaaataccacatcaaatacttttatctatttgacgtgggactcctaacacaa 163  Q
    ||||||||| |||||||| ||||| ||||| | || ||||||||||||||||||    
T  36975287 cttaaatactacatcaaacactttaatctactcgatgtgggactcctaacacaa 36975234  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 163
Target Start/End: Complemental strand, 41206521 - 41206462
Alignment:
Q  104 tcatgtcttaaataccacatcaaatacttttatctatttgacgtgggactcctaacacaa 163  Q
    ||||| |||||||||||||||||| ||||||||||| | ||  |||||| ||||||||||    
T  41206521 tcatgacttaaataccacatcaaacacttttatctactcgatatgggacgcctaacacaa 41206462  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 160
Target Start/End: Original strand, 32623213 - 32623286
Alignment:
Q  88 tattagatgggagaat-tcatgtcttaaataccacatcaaatacttttatctatttgacgtgggactcctaaca 160  Q
    |||||| || |||||| ||||||||||||||||| |||||| | |||||||| || ||| |||||| |||||||    
T  32623213 tattaggtgtgagaatctcatgtcttaaataccatatcaaacatttttatcttttcgacatgggacacctaaca 32623286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 227
Target Start/End: Complemental strand, 36481164 - 36481135
Alignment:
Q  198 atgaagctcattaaccacttgagttcaatt 227  Q
    ||||||||||||||||||||||||||||||    
T  36481164 atgaagctcattaaccacttgagttcaatt 36481135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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