View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18350_low_1 (Length: 716)
Name: NF18350_low_1
Description: NF18350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18350_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 307 - 605
Target Start/End: Original strand, 28933456 - 28933755
Alignment:
| Q |
307 |
acctattttttctaatccagcattctacaaaggaacaatggaccaatccaatataagaacactccagcttatatctagttattctaatccagaattcttc |
406 |
Q |
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| T |
28933456 |
acctattttttctaatccagcattccacaaaggaacaatggaccaatccaatataagaatactccagcttatatctagttattctaatccagaattcttc |
28933555 |
T |
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| Q |
407 |
tttcattggttgcataccccatgggtacaaccactgagttgagaagatattgtcattaaaaaattcattcttttcttcaatgttctgatctagttaaata |
506 |
Q |
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| T |
28933556 |
tttcattggttgcataccccatgggtacaaccactgagttgagaagatattgtcattaaaaaattcattcttttcttcaatgttctgatctagttaaata |
28933655 |
T |
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| Q |
507 |
attttgtttnnnnnnntgaagaattcagtttc-attgatcaacagaaaatttcaagtgaaaaacattcaagtgatcaattatgaattcagtttcagtttc |
605 |
Q |
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| T |
28933656 |
attttgtttaaaaaaatgaagaattcagtttcaattgatcaacagaaaatttcaagtgaaaaacattcaagtgatcaattatgaattcagtttcagtttc |
28933755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 28 - 270
Target Start/End: Original strand, 32817546 - 32817788
Alignment:
| Q |
28 |
ggatggtttacttgctgatgaatccttcaaaagttctgagctgattagtcttgttgaagggtaaggatcagaatgacaccttaacatctttggttttata |
127 |
Q |
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| T |
32817546 |
ggatggtttacttgctgatgaatccttcaaaagttctgagctgattagtcttgttgaagggtaaggatcagaatgacaccttaacatctttggttttata |
32817645 |
T |
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| Q |
128 |
tttaacaagttatcaaaataccaacactcttcaagtagattcattgcttccactttttcatctttgcaaaaagaagattcacaagagctattattatcat |
227 |
Q |
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| T |
32817646 |
tttaacaagttatcaaaataccaacactcttcaagtagattcattgcttccactttttcatctttgcaaaaagaagattcacaagagctattattatcat |
32817745 |
T |
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| Q |
228 |
ttggatccatgtgtttcaacttttctaactttttcacccttac |
270 |
Q |
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| T |
32817746 |
ttggatccatgtgtttcaacttttctaactttttcacccttac |
32817788 |
T |
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