View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18351_high_10 (Length: 254)
Name: NF18351_high_10
Description: NF18351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18351_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 238
Target Start/End: Original strand, 36075087 - 36075314
Alignment:
| Q |
11 |
gagaagcaaagggggaggaaaatgcagtgttgattttagagagagaaagaggtactggttactttggttgtagagagataaagtgacaaaataattatct |
110 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36075087 |
gagaagaaaagggggaggaaaatgcagtgttgattttagagagagaaagaggtactggttactttggttgtagagagataaagtgacaaaataattatct |
36075186 |
T |
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| Q |
111 |
gaatttgttacattcatccttctggattcatgttgttggttagtggattgatgatgatgcttcaataagaacaaaataattgaataagtcgagagaaatt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36075187 |
gaatttgttacattcatccttctggattcatgttgttggttagtggattgatgatgatgcttcaataagaacaaaataattgaataagtagagagaaatt |
36075286 |
T |
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| Q |
211 |
taaatctgagtgtctcaaaagatgaaac |
238 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
36075287 |
taaatctgagtgtctcaaaagatgaaac |
36075314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 238
Target Start/End: Original strand, 42169064 - 42169291
Alignment:
| Q |
11 |
gagaagcaaagggggaggaaaatgcagtgttgattttagagagagaaagaggtactggttactttggttgtagagagataaagtgacaaaataattatct |
110 |
Q |
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|||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42169064 |
gagaagaaaagagggaggaaaatgcagtgttgattttagagagagaaagcggtactggttactttggttgtatagagataaagtgacaaaataattatct |
42169163 |
T |
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| Q |
111 |
gaatttgttacattcatccttctggattcatgttgttggttagtggattgatgatgatgcttcaataagaacaaaataattgaataagtcgagagaaatt |
210 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
42169164 |
gaatttgttacattcatctttctggattcatgttgttggttagtggattgatgatgatgcttcaataagaacaaaataattgaagaagtagagagaaatt |
42169263 |
T |
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| Q |
211 |
taaatctgagtgtctcaaaagatgaaac |
238 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
42169264 |
taaatctgagtgtctcaaaagatgaaac |
42169291 |
T |
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