View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18351_high_6 (Length: 315)
Name: NF18351_high_6
Description: NF18351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18351_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 6 - 265
Target Start/End: Original strand, 48043482 - 48043734
Alignment:
| Q |
6 |
ccgacaaattactgagtcaatgttgttggagtttttacatgagatcatgatgtaacaaacttccctcccattgattgatttcagtcccctgctcatgtga |
105 |
Q |
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| T |
48043482 |
ccgacaaattactgagtcaatgttgttggagtttttacatgagatcatgatgtaacaaacttccctcccattgattgatttcagtcccctgctcatgtga |
48043581 |
T |
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| Q |
106 |
aacaacatcatatgaatggaaagtacgagcacatcctgnnnnnnngcaaattttttgaaatcaaaggatcacacactacttaaatcttttttgtcaggtc |
205 |
Q |
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| T |
48043582 |
aacaacatcatatgaatg--------gagcacatcctgaaaaaaagcaaattttttgaaatcaaaggatcacacactacttaaatcttttttgtcaggtc |
48043673 |
T |
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| Q |
206 |
ttgcttagacaaatccccaggtttgtcaatcttatt-acctagaaccagcagtggaatccc |
265 |
Q |
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| T |
48043674 |
ttgcttagacaaatccccaggtttgtcaatcttattaacctagaaccagcagtggaatccc |
48043734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 39 - 260
Target Start/End: Original strand, 48051481 - 48051701
Alignment:
| Q |
39 |
tttacatgagatcatgatgtaacaaacttccctcccattgattgatttcagtcccctgctcatgtgaaacaacatcatatgaatggaaagtacgagcaca |
138 |
Q |
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| T |
48051481 |
tttacacgagatcatgatgtaacaaacttccttcccatatattgatttcagtcccctgcacatgtgaaacaacatcatatgaaaggcaagtacggacaca |
48051580 |
T |
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| Q |
139 |
tcctgnnnnnnngcaaattttttgaaatcaaaggatcacacactacttaaatcttttttgtcaggtcttgcttagacaaatccccaggtttgtcaatctt |
238 |
Q |
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| T |
48051581 |
tcctgattaaaagctaaaattt-gaaatcataggatcacacactacttaaaccttttctgtcaggtcttgcttagacaaatccccaggtttatcaatctt |
48051679 |
T |
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| Q |
239 |
attacctagaaccagcagtgga |
260 |
Q |
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| T |
48051680 |
gttacttagaaccagcagtgga |
48051701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 48056703 - 48056836
Alignment:
| Q |
9 |
acaaattactgagtcaatgttgttggagtttttacatgagatcatgatgtaacaaacttccctcccattgattgatttcagtcccctgctcatgtgaaac |
108 |
Q |
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| T |
48056703 |
acaaataactgagtcgatgttggtggagtttttacttgagatcatgatgcaacaaacttctctctcatttattgatttcagtctccagtgcacgtgaaac |
48056802 |
T |
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| Q |
109 |
aacatcatatgaatggaaagtacgagcacatcctg |
143 |
Q |
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| T |
48056803 |
aacatca-atgaaaggaaagtacaagcacatcctg |
48056836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 48051422 - 48051480
Alignment:
| Q |
16 |
actgagtcaatgttgttggagtttttacatgagatcatgatgtaacaaacttccctccc |
74 |
Q |
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| T |
48051422 |
actgagtccatgttgttggagtttttacacgagatcatgatgtaacaaacttccctccc |
48051480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 176 - 253
Target Start/End: Original strand, 48056891 - 48056968
Alignment:
| Q |
176 |
acacactacttaaatcttttttgtcaggtcttgcttagacaaatccccaggtttgtcaatcttattacctagaaccag |
253 |
Q |
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| T |
48056891 |
acacagtacttacatcttttctgtcgtgtcttgcttagacaaagcaccaggtttgtcaatcttattaccaagaaccag |
48056968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 48037456 - 48037528
Alignment:
| Q |
24 |
aatgttgttggagtttttacatgagatcatgatgtaacaaacttccctcccattgattgatttcagtcccctg |
96 |
Q |
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| T |
48037456 |
aatgttggtgaagtttttacatgagatcatgaagcaacaaacttctctttcattgatggattccagtcccctg |
48037528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 264
Target Start/End: Original strand, 48045485 - 48045552
Alignment:
| Q |
197 |
tgtcaggtcttgcttagacaaatccccaggtttgtcaatcttattacctagaaccagcagtggaatcc |
264 |
Q |
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| T |
48045485 |
tgtcgggtcttgcttagacaaattgtcaggtttgtcaattttattacctaaaaccagcaattgaatcc |
48045552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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