View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18351_low_10 (Length: 280)

Name: NF18351_low_10
Description: NF18351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18351_low_10
NF18351_low_10
[»] chr1 (1 HSPs)
chr1 (7-263)||(5131447-5131703)
[»] chr5 (8 HSPs)
chr5 (48-106)||(8547085-8547143)
chr5 (52-113)||(8678831-8678892)
chr5 (8-114)||(9004463-9004569)
chr5 (52-113)||(8645323-8645384)
chr5 (48-114)||(2873484-2873550)
chr5 (48-93)||(8530044-8530089)
chr5 (51-114)||(1599251-1599314)
chr5 (181-233)||(8637669-8637721)
[»] chr7 (2 HSPs)
chr7 (51-110)||(35780937-35780996)
chr7 (48-114)||(48360801-48360867)
[»] chr6 (1 HSPs)
chr6 (30-110)||(16717424-16717504)
[»] chr4 (1 HSPs)
chr4 (48-93)||(9444205-9444250)
[»] scaffold0627 (1 HSPs)
scaffold0627 (8-110)||(5711-5810)


Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 7 - 263
Target Start/End: Complemental strand, 5131703 - 5131447
Alignment:
Q  7 gaagcaaaggggaaagatgaaggggcaaaaagtaatgcatgttgcccttattttgataatcttccatcacacctcactgcccacattttgcttaaacttc 106  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5131703 gaagcaaaagggaaagatgaaggggcaaaaagtaatgcatgttgcccttattttgataatcttccatcacacctcactgcccacattttgcttaaacttc 5131604  T
Q  107 ccattaagctggagcctatatttaagcttcctcttcatgatgctaaatcgatcagggagaaaagagacgagattgagaataaatccaaacgccctcatcg 206  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||    
T  5131603 ccattaagctggagcctatatttaagcttcctcttcgtgatgctaaatcgatcagggagaaaagagacgagattgagaataaatccaaacaccctcttcg 5131504  T
Q  207 ggctgtgagattagctttggagaaaaagaatcagaaagtaatggtgggtaaagaaag 263  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5131503 ggctgtgagattagctttggagaaaaagaataagaaagtaatggtgggtaaagaaag 5131447  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 8547085 - 8547143
Alignment:
Q  48 ttgcccttattttgataatcttccatcacacctcactgcccacattttgcttaaacttc 106  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  8547085 ttgcccttattttgataatcttccatctcacctcactgcccacattctgcttaaacttc 8547143  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 8678892 - 8678831
Alignment:
Q  52 ccttattttgataatcttccatcacacctcactgcccacattttgcttaaacttcccattaa 113  Q
    ||||| ||||||||||||||||||||| ||| |||||||||||||||| | |||||||||||    
T  8678892 ccttactttgataatcttccatcacacatcattgcccacattttgcttcatcttcccattaa 8678831  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 9004569 - 9004463
Alignment:
Q  8 aagcaaaggggaaagatgaaggggcaaaaagtaatgcatgttgcccttattttgataatcttccatcacacctcactgcccacattttgcttaaacttcc 107  Q
    ||||||| ||||||| ||| | |||| ||||| ||| |  ||||||||| |||| |||||||||||| |||||||||  ||||||| ||||| | |||||    
T  9004569 aagcaaaagggaaagttgatgaggcagaaagtcatgaactttgcccttactttgctaatcttccatctcacctcactaaccacattctgcttcatcttcc 9004470  T
Q  108 cattaag 114  Q
    |||||||    
T  9004469 cattaag 9004463  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 8645384 - 8645323
Alignment:
Q  52 ccttattttgataatcttccatcacacctcactgcccacattttgcttaaacttcccattaa 113  Q
    ||||| ||||||||||||||||||||| ||| ||||||||| |||||| | |||||||||||    
T  8645384 ccttactttgataatcttccatcacacatcattgcccacatgttgcttcatcttcccattaa 8645323  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 2873484 - 2873550
Alignment:
Q  48 ttgcccttattttgataatcttccatcacacctcactgcccacattttgcttaaacttcccattaag 114  Q
    ||||||||| ||||||||||||||||| ||| | ||| |||||||| | ||| ||||||||||||||    
T  2873484 ttgcccttactttgataatcttccatctcacttaactacccacattcttcttcaacttcccattaag 2873550  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 93
Target Start/End: Complemental strand, 8530089 - 8530044
Alignment:
Q  48 ttgcccttattttgataatcttccatcacacctcactgcccacatt 93  Q
    |||||||||||||||||| ||||| || ||||||||||||||||||    
T  8530089 ttgcccttattttgataaacttccgtctcacctcactgcccacatt 8530044  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 1599251 - 1599314
Alignment:
Q  51 cccttattttgataatcttccatcacacctcactgcccacattttgcttaaacttcccattaag 114  Q
    ||||| ||||||||||||| |||| ||| ||||||||| |||| ||||| ||||||| ||||||    
T  1599251 ccctttttttgataatctttcatctcacgtcactgcccgcattctgcttcaacttcctattaag 1599314  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 8637721 - 8637669
Alignment:
Q  181 gagaataaatccaaacgccctcatcgggctgtgagattagctttggagaaaaa 233  Q
    ||||||||| |||| ||||||  ||| |||| |||||||||||||||||||||    
T  8637721 gagaataaacccaagcgccctattcgtgctgcgagattagctttggagaaaaa 8637669  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 35780996 - 35780937
Alignment:
Q  51 cccttattttgataatcttccatcacacctcactgcccacattttgcttaaacttcccat 110  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  35780996 cccttattttgataatcttccatcccacctcaccgcccacattttgcttcaacttcccat 35780937  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 48360801 - 48360867
Alignment:
Q  48 ttgcccttattttgataatcttccatcacacctcactgcccacattttgcttaaacttcccattaag 114  Q
    ||||||||||||||||||||||||||  |||||||||||||||||| | ||| ||||||||||||||    
T  48360801 ttgcccttattttgataatcttccatatcacctcactgcccacattctccttcaacttcccattaag 48360867  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 110
Target Start/End: Complemental strand, 16717504 - 16717424
Alignment:
Q  30 ggcaaaaagtaatgcatgttgcccttattttgataatcttccatcacacctcactgcccacattttgcttaaacttcccat 110  Q
    |||| ||||| ||| |||| |||  |||||||||| ||||||||| |||||||| ||||||||||||||| ||||||||||    
T  16717504 ggcagaaagtgatgaatgtcgccactattttgatattcttccatcccacctcaccgcccacattttgcttcaacttcccat 16717424  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 93
Target Start/End: Complemental strand, 9444250 - 9444205
Alignment:
Q  48 ttgcccttattttgataatcttccatcacacctcactgcccacatt 93  Q
    |||||||||||||||||||||||| || ||||||||||||||||||    
T  9444250 ttgcccttattttgataatcttccgtctcacctcactgcccacatt 9444205  T

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Target: scaffold0627 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 5810 - 5711
Alignment:
Q  8 aagcaaaggggaaagatgaaggggcaaaaagtaatgcatgttgcccttattttgataatcttccatcacacctcactgcccacattttgcttaaacttcc 107  Q
    ||||||| ||||||| ||| | |||| ||||| ||| ||||||   ||||||||||| ||||||||| ||||||||  | |||||||| ||| |||||||    
T  5810 aagcaaaagggaaagttgaggaggcagaaagtcatgaatgttg---ttattttgatattcttccatcccacctcaccactcacatttttcttcaacttcc 5714  T

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