View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18351_low_13 (Length: 245)

Name: NF18351_low_13
Description: NF18351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18351_low_13
NF18351_low_13
[»] chr2 (4 HSPs)
chr2 (17-147)||(30013364-30013496)
chr2 (17-147)||(30369632-30369763)
chr2 (17-99)||(34946832-34946914)
chr2 (217-245)||(30369831-30369859)
[»] chr4 (3 HSPs)
chr4 (17-99)||(38827756-38827838)
chr4 (25-100)||(38896811-38896886)
chr4 (214-245)||(38827956-38827987)
[»] chr5 (1 HSPs)
chr5 (17-99)||(18667181-18667263)
[»] chr1 (1 HSPs)
chr1 (17-99)||(15077524-15077606)
[»] chr3 (1 HSPs)
chr3 (17-75)||(51122884-51122942)


Alignment Details
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 30013364 - 30013496
Alignment:
Q  17 tggaaaactagttttaaaaccggtttgattctttttgaagtagatatatgttattgaatgaaatttaaaatttgc--aaaaaaaatgaaaaactagnnnn 114  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||| ||||||||        
T  30013364 tggaaaactagttttaaaaccagtttgattctttttgaagtagatatatgttattgaatgaaatttagaatttgcaaaaaaaaaatggaaaactagtttt 30013463  T
Q  115 nnnnnnaaactggattaaaagcggattttgaat 147  Q
          |||||||||||||| ||||||||||||    
T  30013464 ttttggaaactggattaaaaccggattttgaat 30013496  T

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Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 30369632 - 30369763
Alignment:
Q  17 tggaaaactagttttaaaaccggtttgattctttttgaagtagatatatgttattgaatgaaatttaaaatttgc-aaaaaaaatgaaaaactagnnnnn 115  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||         
T  30369632 tggaaaattagttttaaaaccggtttgattatttttgaagtagatatatgttattgaatgaaatttagaatttgcaaaaaaaaataaaaaactagttttt 30369731  T
Q  116 nnnnnaaactggattaaaagcggattttgaat 147  Q
         |||||||||||||| ||||||||||||    
T  30369732 tttttaaactggattaaaaccggattttgaat 30369763  T

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Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 34946914 - 34946832
Alignment:
Q  17 tggaaaactagttttaaaaccggtttgattctttttgaagtagatatatgttattgaatgaaatttaaaatttgcaaaaaaaa 99  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||    
T  34946914 tggaaaattagttttaaaactggtttgattctttttgaagtagatatatgtcattgaatgaaatttagtatttgcaaaaaaaa 34946832  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 245
Target Start/End: Original strand, 30369831 - 30369859
Alignment:
Q  217 acaaaccggtttcaaaccggttctgaacc 245  Q
    |||||||||||||||||||||||||||||    
T  30369831 acaaaccggtttcaaaccggttctgaacc 30369859  T

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Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 38827756 - 38827838
Alignment:
Q  17 tggaaaactagttttaaaaccggtttgattctttttgaagtagatatatgttattgaatgaaatttaaaatttgcaaaaaaaa 99  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38827756 tggaaaactagttttaaaaccggtttgattatttttgaagtagatatatgttattgaatgaaatttagaatttgcaaaaaaaa 38827838  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 100
Target Start/End: Complemental strand, 38896886 - 38896811
Alignment:
Q  25 tagttttaaaaccggtttgattctttttgaagtagatatatgttattgaatgaaatttaaaatttgcaaaaaaaat 100  Q
    ||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||  |||||||||||||||    
T  38896886 tagttttaaaatcggtttgattatttttgaagtagatgtatgttattgaatgaaatttagtatttgcaaaaaaaat 38896811  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 245
Target Start/End: Original strand, 38827956 - 38827987
Alignment:
Q  214 ctgacaaaccggtttcaaaccggttctgaacc 245  Q
    ||||||||||||||||||||||||||||||||    
T  38827956 ctgacaaaccggtttcaaaccggttctgaacc 38827987  T

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Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 18667263 - 18667181
Alignment:
Q  17 tggaaaactagttttaaaaccggtttgattctttttgaagtagatatatgttattgaatgaaatttaaaatttgcaaaaaaaa 99  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  18667263 tggaaaactagttttaaaaccggtttgatcctttttgaagtagatatatgttattgaatgaaatttagtatttgcaaaaaaaa 18667181  T

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Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 15077524 - 15077606
Alignment:
Q  17 tggaaaactagttttaaaaccggtttgattctttttgaagtagatatatgttattgaatgaaatttaaaatttgcaaaaaaaa 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||| ||||||||    
T  15077524 tggaaaactagttttaaaaccggtttgattctttttgaagtagatatatgttatcgaatgaaatttagtatttgaaaaaaaaa 15077606  T

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Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 51122884 - 51122942
Alignment:
Q  17 tggaaaactagttttaaaaccggtttgattctttttgaagtagatatatgttattgaat 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51122884 tggaaaactagttttaaaaccggtttgattctttttgaagtagatatatgttattgaat 51122942  T

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