View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18351_low_2 (Length: 611)
Name: NF18351_low_2
Description: NF18351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18351_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 497; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 50 - 590
Target Start/End: Complemental strand, 37555522 - 37554982
Alignment:
| Q |
50 |
tgcttgactttttctgcatccaatttttgtgaaaccaaacatagcacaatgcaaacaagtaacaacactcatgcaaatgcaaacgnnnnnnnntaaaagc |
149 |
Q |
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| T |
37555522 |
tgcttgactttttctgcatgcaatttttgtgaaaccaaacatagcataatgcaaacaagtaacaacactcatgcaaatgcaaacgaaaaaaaataaaagc |
37555423 |
T |
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| Q |
150 |
aaaacagaaagtaagaagctgattgaagaaacagacatgagattgaacccagaggagtccaaaacttcagttaatttgacatagaaggtttctatctcta |
249 |
Q |
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| T |
37555422 |
aaaacagaaagtaagaagctgattgaagaaacagacatgagattgaacccagaggagtccaaaacttcagttagtttgacatagaaggtctctatctcta |
37555323 |
T |
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| Q |
250 |
agtcatcattggacacaacagtaccattggtgagtttggtatctgatggtgatgatgatggaaccatagtcttgttgccttccattgtttgagctaggaa |
349 |
Q |
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| T |
37555322 |
agtcatcattggacacaacagtaccattggtgagtttggtatctgatggtgatgatgatggaaccatagtcttgttgccttccattgtttgagctaggaa |
37555223 |
T |
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| Q |
350 |
actaccaaaacacactatgctttttctgagttgtttgggtgacttgttggaatggaaagaattatgtatatctctcacatacaatagaaaatcaacatct |
449 |
Q |
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| T |
37555222 |
actaccaaaacacactatgctatttctgagttgtttgggtgacttgttggaatggaaagaattatgtatatctctcacatacaatagaaaatcaacatct |
37555123 |
T |
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| Q |
450 |
aacacatgactactctcgacacctataccaactccaaccatttacgtggcagtcttatgtctttcctttcttttacatctgttctattgttctgttaaaa |
549 |
Q |
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| T |
37555122 |
aacacatgactactctcgacacctataccaactccaaccatttacgtggcagtcttatgtctttcctttcttttacatctgttctattgttctgttaaaa |
37555023 |
T |
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| Q |
550 |
aagtaagtcaataaatttacgaaattgtgattgtgaagtag |
590 |
Q |
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| T |
37555022 |
aagtaagtcaataaatttacgaaattgtgattgtgaagtag |
37554982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 501 - 584
Target Start/End: Complemental strand, 37554180 - 37554098
Alignment:
| Q |
501 |
gtcttatgtctttcctttcttttacatctgttctattgttctgttaaaaaagtaagtcaataaatttacgaaattgtgattgtg |
584 |
Q |
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| T |
37554180 |
gtcttgtgtctttcacttcttttacatctcttctattgttaggttagaaaa-caagtcaataaatttaagaacttgtgattgtg |
37554098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 341
Target Start/End: Original strand, 4445004 - 4445046
Alignment:
| Q |
299 |
tgatgatgatggaaccatagtcttgttgccttccattgtttga |
341 |
Q |
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| T |
4445004 |
tgatgatgatgaaaccatagtcttgtttccttccattgtttga |
4445046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 518 - 591
Target Start/End: Original strand, 4445200 - 4445276
Alignment:
| Q |
518 |
tcttttacatctgtt---ctattgttctgttaaaaaagtaagtcaataaatttacgaaattgtgattgtgaagtagt |
591 |
Q |
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| T |
4445200 |
tcttttacatctgttattctattgttctggtaaaaaaacatgtcaataaatttaacaaattgtgattgtgatgtagt |
4445276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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