View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18351_low_3 (Length: 479)
Name: NF18351_low_3
Description: NF18351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18351_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 23 - 239
Target Start/End: Complemental strand, 35064719 - 35064503
Alignment:
| Q |
23 |
aaggcaccaagattcgatttcatcaccaaaccctaaccgttgctgttgcttctcgtggtttctgattcggtagggtttcgcttcgctggatttggattcc |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
35064719 |
aaggcaccaagattcgatttcatcaccaaaccctaaccgttcctgttgcttctcgtggtttctaattcggtagggtttcgcttcgctggatttggattcc |
35064620 |
T |
|
| Q |
123 |
atttttgttgatgctctcaagatcattcaagactccgtttcttatcgttcttgaagaattttagatttattttcattgttatagtggttcgatttattcg |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35064619 |
atttttgttgatgctctcaagatcattcaagactccgtttcttatcgttcttgaagaaatttagatttattttcattgttatggtggttcgatttattcg |
35064520 |
T |
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| Q |
223 |
atcgtaacctagatagg |
239 |
Q |
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||||| ||||||||||| |
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| T |
35064519 |
atcgtgacctagatagg |
35064503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 23 - 238
Target Start/End: Complemental strand, 42815750 - 42815534
Alignment:
| Q |
23 |
aaggcaccaagattcgatttcatcaccaaaccctaacc-gttgctgttgcttctcgtggtttctgattcggtagggtttcgcttcgctggatttggattc |
121 |
Q |
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||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42815750 |
aaggcaccaagattccatttcatcaccaaaccctaacccgttgctgttgcttctcgcggtttctgattcggtagggtttcgcttcgctggatttggattc |
42815651 |
T |
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| Q |
122 |
catttttgttgatgctctcaagatcattcaagactccgtttcttatcgttcttgaagaattttagatttattttcattgttatagtggttcgatttattc |
221 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| | |||||||||||||||| |
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| T |
42815650 |
cattgttgttgatgctctcaagatcattcaagactccgtttcttatcgttcttgaagaattttagatttattttaatcgttctggtggttcgatttattc |
42815551 |
T |
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| Q |
222 |
gatcgtaacctagatag |
238 |
Q |
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||||||||||||||||| |
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| T |
42815550 |
gatcgtaacctagatag |
42815534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 23 - 201
Target Start/End: Complemental strand, 43025908 - 43025726
Alignment:
| Q |
23 |
aaggcaccaagattcgatttcatcaccaaaccctaaccgttgctgttgcttctcgtggtttctgattcggtagggtttcgcttcgctggatttggattcc |
122 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43025908 |
aaggcaccaagattcgatttcatcaccaaaccctagacgttgctgttgctttacgcggtttcttgttcggtagggtttcgcttcgctggatttggattcc |
43025809 |
T |
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| Q |
123 |
atttttgttgatgctctcaagatcattcaagactccgttt----cttatcgttcttgaagaattttagatttattttcattgt |
201 |
Q |
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||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
43025808 |
attgttgttgatgctctcaagatcattcaagactccgtttcttacttatcgttcttgaagagttttagatttattttcattgt |
43025726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 376 - 469
Target Start/End: Complemental strand, 35064371 - 35064278
Alignment:
| Q |
376 |
gtgttaattcaatagagtaatttaccatggcggtgtattataaatttaagagtgcaaaagattattattcaattcctatggatggtcctttcat |
469 |
Q |
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| T |
35064371 |
gtgttaattcaatagagtaatttaccatggcggtgtattataaatttaagagtgcaaaagattattattcaattcctatggatggtcctttcat |
35064278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 377 - 469
Target Start/End: Complemental strand, 42815411 - 42815319
Alignment:
| Q |
377 |
tgttaattcaatagagtaatttaccatggcggtgtattataaatttaagagtgcaaaagattattattcaattcctatggatggtcctttcat |
469 |
Q |
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| T |
42815411 |
tgttaattcaatagagtattctacaatggcggtgtattataaatttaagagtgcaaaagattataattcaattccaatggatggtcctttcat |
42815319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 376 - 466
Target Start/End: Complemental strand, 43025627 - 43025537
Alignment:
| Q |
376 |
gtgttaattcaatagagtaatttaccatggcggtgtattataaatttaagagtgcaaaagattattattcaattcctatggatggtccttt |
466 |
Q |
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||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
43025627 |
gtgttaattgaatagagtaatttacaatggcggtgtattataaatttaagagtgcaaaagattaccattcaattccaatggatggtccttt |
43025537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 398 - 472
Target Start/End: Original strand, 41562472 - 41562546
Alignment:
| Q |
398 |
taccatggcggtgtattataaatttaagagtgcaaaagattattattcaattcctatggatggtcctttcatctc |
472 |
Q |
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||||||||||||||||||||||||||| ||||||| ||||||| |||||||| | |||||||||||||||||||| |
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| T |
41562472 |
taccatggcggtgtattataaatttaaaagtgcaagagattatgattcaatttccatggatggtcctttcatctc |
41562546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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