View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18351_low_4 (Length: 409)
Name: NF18351_low_4
Description: NF18351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18351_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 16 - 389
Target Start/End: Original strand, 42127637 - 42128010
Alignment:
| Q |
16 |
tcaaccacatctttgctaactggtttaccatccctcagttctgcaatcacaaccaaaccaacctgatcagaaccatctggcaaggaaatcccttttgctg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42127637 |
tcaaccacatctttgctaactggtttaccatccctcagttctgcaatcacaaccaaaccaacctgatcagaaccatctggcaaggaaatcccttttgctg |
42127736 |
T |
|
| Q |
116 |
ataaagtttcttcagggacaccaatgacagcacaacatcctggacgaagaagttcagacgaactctctaccgtcttttcaacatctgacgaatagatgtt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42127737 |
ataaagtttcttcagggacaccaatgacagcacaacatcctggacgaagaagttcagacgaactctctaccgtcttttcaacatctgacgaatagatgtt |
42127836 |
T |
|
| Q |
216 |
tcttccagcaacaatgataagatccttgattcttccagtgatgaatagcttcccatcaattatccttcccaagtctccagttcttgtgtagaagcgtccg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42127837 |
tcttccagcaacaatgataagatccttgattcttccagtgatgaatagcttcccatcaattatccttcccaagtctccagttcttgtgtagaagcgtccg |
42127936 |
T |
|
| Q |
316 |
ggatggttcggaagctgatttcggaaagttgactgactcagttcttccttcccccagtatcctattcctgcact |
389 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42127937 |
ggatggttcggaagctgattttggaaagttgactgactcagttcttccttcccccagtatcctattcctgcact |
42128010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 9e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 16 - 389
Target Start/End: Original strand, 24931226 - 24931599
Alignment:
| Q |
16 |
tcaaccacatctttgctaactggtttaccatccctcagttctgcaatcacaaccaaaccaacctgatcagaaccatctggcaaggaaatcccttttgctg |
115 |
Q |
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|||| ||||||||||||||| ||||||| ||||| | |||||||||||||||||| ||||||||||||| ||||| || | ||||| || ||||||| |
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| T |
24931226 |
tcaatcacatctttgctaacctgtttaccgtcccttacttctgcaatcacaaccaaggcaacctgatcagagccatcaggaatagaaattccctttgctg |
24931325 |
T |
|
| Q |
116 |
ataaagtttcttcagggacaccaatgacagcacaacatcctggacgaagaagttcagacgaactctctaccgtcttttcaacatctgacgaatagatgtt |
215 |
Q |
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||| | |||| ||||||||||||||||||||||| || || |||||||||| |||||| ||| |||| | |||||||| || || ||||| || ||||| |
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| T |
24931326 |
atagaatttcctcagggacaccaatgacagcacagcaaccaggacgaagaaattcagatgaagtctcaattgtcttttccacgtcagacgagtaaatgtt |
24931425 |
T |
|
| Q |
216 |
tcttccagcaacaatgataagatccttgattcttccagtgatgaatagcttcccatcaattatccttcccaagtctccagttcttgtgtagaagcgtccg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| | |||||||||||||||||||||||| ||||| |
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| T |
24931426 |
tcttccagcaacaatgataagatccttgattcttccagtgatgaatagcttctgatctattattcgtcccaagtctccagttcttgtgtaattacgtccc |
24931525 |
T |
|
| Q |
316 |
ggatggttcggaagctgatttcggaaagttgactgactcagttcttccttcccccagtatcctattcctgcact |
389 |
Q |
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||| | ||| ||| | ||| | ||||||| |||||||| ||||||| | ||||| ||||||| ||||||||| |
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| T |
24931526 |
ggacgattcataagttcattcctgaaagttttctgactcaattcttcccttccccaatatcctactcctgcact |
24931599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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