View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18351_low_5 (Length: 350)
Name: NF18351_low_5
Description: NF18351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18351_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 14 - 335
Target Start/End: Complemental strand, 32820807 - 32820485
Alignment:
| Q |
14 |
aggtgagaggaactaagcatgggtttaagaagaaaattgtggtgaataaaataaaaacacaagttttcatacatagcataaagtatgttaagaaaacaaa |
113 |
Q |
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| T |
32820807 |
aggtgagaggaactaagcatgggtttaacaagagaattgtgatgaataaaataaaaacacaagttttcatacatagcataaagtatgttaagaaaacaaa |
32820708 |
T |
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| Q |
114 |
gcacttataattgttttctcaacacacaaacaaaaagtgttagcatcaataagaagccacgtcagcatttatatattattactcccattaagcacttcat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
32820707 |
gcacttataattgttttctcaacacacaaacaaaaagtgttagcatcaataagaagccacatcagcatttatatattattactcccattaagcacttcat |
32820608 |
T |
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| Q |
214 |
catagctaactaaataaggcgggaaaagtgagtgggaaaaagtcattttggcgtggaagttacgcggtaaatttttagactgtgcaactt-attgcttat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32820607 |
catagctaactaaataaggcgggaaaagtgagtgggaaaaagtcattttggcgtggaagttacgcggtaaatttttagactgtgcaacttaattgcttat |
32820508 |
T |
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| Q |
313 |
tatattgaaaactgtgaaggaat |
335 |
Q |
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||||||||||||||||||||||| |
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| T |
32820507 |
tatattgaaaactgtgaaggaat |
32820485 |
T |
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