View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18351_low_8 (Length: 302)
Name: NF18351_low_8
Description: NF18351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18351_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 8 - 284
Target Start/End: Original strand, 42852614 - 42852890
Alignment:
| Q |
8 |
cagcacagatgccatctttaggcggatcagcaattaatacggaatttcttagagcacgcgcacttatccgagataggatgtaagttactatttgtttgtt |
107 |
Q |
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| T |
42852614 |
cagcacagatgccatctttaggcggatcagcaattaatacggaatttcttagagcacgcacacttatccgagataggatgtaagttactatttgtttgtt |
42852713 |
T |
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| Q |
108 |
taacttgtcaataggtgtaatatttggagattgatattttcttgaaactaacaaatataaccatttaatcgttttaaatttattactcagattgtgatta |
207 |
Q |
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| T |
42852714 |
taacttgtcaataggtgtaatatttggagattgatattttcttgaaactaacaaatataaccatttaatcgttttaatttttttactcagattgtgatta |
42852813 |
T |
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| Q |
208 |
tatgtagtgtttatagttggtatttttgcgacttgcttgacgacattgaggcgcatttctttttctgctgctgtata |
284 |
Q |
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| T |
42852814 |
tatgtagtgtttatagttggtatttttgcgacttgcttgacgacattgagacacatttctttttctgctgctgtata |
42852890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 111
Target Start/End: Original strand, 42854041 - 42854103
Alignment:
| Q |
49 |
gaatttcttagagcacgcgcacttatccgagataggatgtaagttactatttgtttgtttaac |
111 |
Q |
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| T |
42854041 |
gaatttcttagagcacgctcatttattcaagagaggatgtaagttaccatttgtttgtttaac |
42854103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 42860281 - 42860383
Alignment:
| Q |
15 |
gatgccatctttaggcggatcagcaattaatacgga------atttcttagagcacgcgcacttatccgagataggatgtaagttactatttgtttgttt |
108 |
Q |
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| T |
42860281 |
gatgccatctttaggcggatcaacgattaacatggaccaagaatttcttagagcacactcatttattcaagagaggatgtaagttgctatttgtttgttt |
42860380 |
T |
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| Q |
109 |
aac |
111 |
Q |
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||| |
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| T |
42860381 |
aac |
42860383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 42848006 - 42848050
Alignment:
| Q |
115 |
tcaataggtgtaatatttggagattgatattttcttgaaactaac |
159 |
Q |
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| T |
42848006 |
tcaataggtgtaatacttgaaaattcatattttcttgaaactaac |
42848050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 21765105 - 21765157
Alignment:
| Q |
49 |
gaatttcttagagcacgcgcacttatccgagataggatgtaagttactatttg |
101 |
Q |
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| T |
21765105 |
gaatttcttagggcacgcgcagttgtacgagatgggatgtaagttactatttg |
21765157 |
T |
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