View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18352_high_9 (Length: 240)

Name: NF18352_high_9
Description: NF18352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18352_high_9
NF18352_high_9
[»] chr8 (3 HSPs)
chr8 (9-224)||(7950376-7950591)
chr8 (9-222)||(7941409-7941622)
chr8 (9-149)||(7947033-7947173)
[»] chr6 (4 HSPs)
chr6 (10-187)||(6802994-6803171)
chr6 (10-224)||(6785836-6786047)
chr6 (10-99)||(12837566-12837655)
chr6 (13-110)||(17278566-17278663)
[»] chr3 (7 HSPs)
chr3 (10-130)||(12110190-12110310)
chr3 (10-130)||(12123861-12123981)
chr3 (10-113)||(12128042-12128145)
chr3 (10-126)||(30157283-30157399)
chr3 (10-86)||(30056026-30056102)
chr3 (37-131)||(30079714-30079808)
chr3 (10-127)||(25481717-25481834)
[»] chr7 (4 HSPs)
chr7 (10-127)||(15129286-15129403)
chr7 (10-117)||(20472158-20472265)
chr7 (41-114)||(15107734-15107807)
chr7 (30-118)||(20460349-20460437)
[»] chr1 (1 HSPs)
chr1 (10-111)||(5951050-5951151)


Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 9 - 224
Target Start/End: Complemental strand, 7950591 - 7950376
Alignment:
Q  9 aaaaacaccatccatattcgatatcaggattaggataacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgagactgacataagtttgg 108  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  7950591 aaaaacaccatccatgttcgatatcaggattaggataacgggcacaaaagcttccactttccttcttcgtgcaatcagcgtgagactgacataagttagg 7950492  T
Q  109 atgttcctcaaccatcttcataacagttggagatgatggatttgtacaataacctccaactagataaacagggatgcaacgacaatcgctagaacgacat 208  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||   || |||||||||||||||||||||||||||||||    
T  7950491 atgttcctcaaccatcttcataacagttggagatgatggatatgtacaataacctgcaactagtccaatagggatgcaacgacaatcgctagaacgacat 7950392  T
Q  209 ggtggcatctcaaatg 224  Q
    ||||||||||||||||    
T  7950391 ggtggcatctcaaatg 7950376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 7941622 - 7941409
Alignment:
Q  9 aaaaacaccatccatattcgatatcaggattaggataacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgagactgacataagtttgg 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||| ||||| ||||||||||| |     
T  7941622 aaaaacaccatccatattcgatatcaggattaggataacgagcacaaaagctaccacttcctttcttcgtgcaatcagcatgagattgacataagttagc 7941523  T
Q  109 atgttcctcaaccatcttcataacagttggagatgatggatttgtacaataacctccaactagataaacagggatgcaacgacaatcgctagaacgacat 208  Q
    ||||| ||||||||||||| | | ||||||||||||||||| |   || |  ||||||| |||   |||||| |||||||| ||   ||| ||| |||||    
T  7941522 atgtttctcaaccatcttcgtgatagttggagatgatggatctacgcagtttcctccaattagtataacaggaatgcaacggcagctgcttgaaggacat 7941423  T
Q  209 ggtggcatctcaaa 222  Q
    ||||||||||||||    
T  7941422 ggtggcatctcaaa 7941409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 9 - 149
Target Start/End: Complemental strand, 7947173 - 7947033
Alignment:
Q  9 aaaaacaccatccatattcgatatcaggattaggataacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgagactgacataagtttgg 108  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||| ||||| ||||||||||| |     
T  7947173 aaaaacaccatccatatttgatatcaggattaggataacgagcacaaaagctaccacttcctttcttcgtgcaatcagcatgagattgacataagttagc 7947074  T
Q  109 atgttcctcaaccatcttcataacagttggagatgatggat 149  Q
    ||||| ||||||||||||| | | |||||||||||||||||    
T  7947073 atgtttctcaaccatcttcgtgatagttggagatgatggat 7947033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 4e-53; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 10 - 187
Target Start/End: Original strand, 6802994 - 6803171
Alignment:
Q  10 aaaacaccatccatattcgatatcaggattaggataacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgagactgacataagtttgga 109  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||| | ||||||||||||||||| ||||||||||||||||| |||    
T  6802994 aaaacaccatccatattcgatatcaagattaggataacgagcgcaaaaactcccacttcctttcttcgtgcaatcagcatgagactgacataagttagga 6803093  T
Q  110 tgttcctcaaccatcttcataacagttggagatgatggatttgtacaataacctccaactagataaacagggatgcaa 187  Q
    ||||||||||||||||||||||||||||| ||||||| ||  |  || |||||| |||||| | ||| ||||||||||    
T  6803094 tgttcctcaaccatcttcataacagttggggatgatgcatgcgagcagtaacctacaactaaaaaaagagggatgcaa 6803171  T

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Target: chr6; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 10 - 224
Target Start/End: Original strand, 6785836 - 6786047
Alignment:
Q  10 aaaacaccatccatattcgatatcaggattaggataacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgagactgacataagtttgga 109  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||| || |||||| | |||||||| ||||| || |||    
T  6785836 aaaataccatccatattcgatattaggattaggataacgagcacaaaaactcccacttttcttctttgtacaatcaacatgagactggcataaattagga 6785935  T
Q  110 tgttcctcaaccatcttcataacagttggagatgatggatttgtacaataacctccaactagataaacagggatgcaacgacaatcgctagaacgacatg 209  Q
    |||||||| ||||||||||||| || |   |||  ||||||| | ||  ||||||||| |||   || |||||||||||||||||||||||| |||||||    
T  6785936 tgttcctcgaccatcttcataatagat---gatattggatttatgcagaaacctccaattagcgcaatagggatgcaacgacaatcgctagagcgacatg 6786032  T
Q  210 gtggcatctcaaatg 224  Q
    |||||||||||||||    
T  6786033 gtggcatctcaaatg 6786047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 99
Target Start/End: Original strand, 12837566 - 12837655
Alignment:
Q  10 aaaacaccatccatattcgatatcaggattaggataacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgagactgaca 99  Q
    ||||||||| |||| || | |||||| ||||||| ||||||| ||||||||||||||| |||||||  |||| ||| | |||||||||||    
T  12837566 aaaacaccagccatttttgttatcagaattaggagaacgagcgcaaaagctcccacttcccttcttgttgcattcatcatgagactgaca 12837655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 17278566 - 17278663
Alignment:
Q  13 acaccatccatattcgatatcaggattaggataacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgagactgacataagtttggat 110  Q
    |||||| ||||| |||| || |||| ||||||||||||| |||||||| |||| | |||||| | |||| ||  | |||||||||||  |||||||||    
T  17278566 acaccaaccataatcgacattaggactaggataacgagcgcaaaagctaccacgtcccttctccttgcattccacatgagactgacaatagtttggat 17278663  T

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Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 10 - 130
Target Start/End: Complemental strand, 12110310 - 12110190
Alignment:
Q  10 aaaacaccatccatattcgatatcaggattaggataacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgagactgacataagtttgga 109  Q
    ||||||||| |||||||||| ||||| ||||| |||||||||||||||| |||||||| |||||||  |||| || || ||||  ||||||||||| |||    
T  12110310 aaaacaccacccatattcgacatcagcattagcataacgagcacaaaagttcccacttcccttcttgatgcactcggcatgagtttgacataagttagga 12110211  T
Q  110 tgttcctcaaccatcttcata 130  Q
    |||||||| | ||||||||||    
T  12110210 tgttcctcgatcatcttcata 12110190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 130
Target Start/End: Complemental strand, 12123981 - 12123861
Alignment:
Q  10 aaaacaccatccatattcgatatcaggattaggataacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgagactgacataagtttgga 109  Q
    |||||||||||||||||||||||||| ||||| |||||| ||||||||| | |||||| |||||||   ||| ||||| ||||  || |||||||| |||    
T  12123981 aaaacaccatccatattcgatatcagcattagcataacgggcacaaaagtttccacttcccttcttgaagcattcagcatgagtttggcataagttagga 12123882  T
Q  110 tgttcctcaaccatcttcata 130  Q
    |||||||| | ||||||||||    
T  12123881 tgttcctcgatcatcttcata 12123861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 113
Target Start/End: Complemental strand, 12128145 - 12128042
Alignment:
Q  10 aaaacaccatccatattcgatatcaggattaggataacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgagactgacataagtttgga 109  Q
    |||||||||||||||||||||||||  ||||| |||||||||||||||| | |||||| |||||||  |||| || || ||||  ||||||||||| |||    
T  12128145 aaaacaccatccatattcgatatcatcattagcataacgagcacaaaagtttccacttcccttcttgatgcactcggcatgagtttgacataagttagga 12128046  T
Q  110 tgtt 113  Q
    ||||    
T  12128045 tgtt 12128042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 126
Target Start/End: Original strand, 30157283 - 30157399
Alignment:
Q  10 aaaacaccatccatattcgatatcaggattaggataacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgagactgacataagtttgga 109  Q
    ||||||||| ||||||| |||||||| ||||||| | ||||||||| |  |||||||  |||| || ||||| ||| | ||||||  ||||||||| ||     
T  30157283 aaaacaccagccatatttgatatcagaattaggaaagcgagcacaataattcccactacccttttttgtgcattcatcatgagaccaacataagttaggt 30157382  T
Q  110 tgttcctcaaccatctt 126  Q
    |||||||||||| ||||    
T  30157383 tgttcctcaaccttctt 30157399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 30056026 - 30056102
Alignment:
Q  10 aaaacaccatccatattcgatatcaggattaggataacgagcacaaaagctcccactttccttcttcgtgcaatcag 86  Q
    ||||||||| ||||||| |||||||| ||||| | |||||||||||||  |||||||  ||||||| ||||| ||||    
T  30056026 aaaacaccagccatatttgatatcagaattagcaaaacgagcacaaaaattcccactacccttctttgtgcattcag 30056102  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 131
Target Start/End: Original strand, 30079714 - 30079808
Alignment:
Q  37 attaggataacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgagactgacataagtttggatgttcctcaaccatcttcataa 131  Q
    ||||||| |||||||||||||  |||||||  | ||||| ||||| |||| |||||  || |||||||| |||||||| |||||| |||| ||||    
T  30079714 attaggaaaacgagcacaaaaattcccactacctttctttgtgcattcagtgtgagtttggcataagttaggatgttcttcaaccttctttataa 30079808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 127
Target Start/End: Complemental strand, 25481834 - 25481717
Alignment:
Q  10 aaaacaccatccatattcgatatcaggattaggataacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgagactgacataagtttgga 109  Q
    ||||||||| |||||||| | |  || ||| ||||||||  ||||||| ||||||||  | ||||| ||||||||||  |||||||||||||  || | |    
T  25481834 aaaacaccagccatattccaaaatagaatttggataacgtccacaaaaactcccactacctttctttgtgcaatcagtatgagactgacataccttagaa 25481735  T
Q  110 tgttcctcaaccatcttc 127  Q
    | || |||||||||||||    
T  25481734 tatttctcaaccatcttc 25481717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 10 - 127
Target Start/End: Original strand, 15129286 - 15129403
Alignment:
Q  10 aaaacaccatccatattcgatatcaggattaggataacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgagactgacataagtttgga 109  Q
    ||||||||| |||| ||||||||||| |||||||||||||||||| || |||||| || |||||||  |||||||   ||| || ||||||||||| |||    
T  15129286 aaaacaccagccatgttcgatatcagaattaggataacgagcacagaaactcccatttcccttcttgatgcaatctatgtgggattgacataagttggga 15129385  T
Q  110 tgttcctcaaccatcttc 127  Q
    ||||| || |||||||||    
T  15129386 tgttcttcgaccatcttc 15129403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 117
Target Start/End: Complemental strand, 20472265 - 20472158
Alignment:
Q  10 aaaacaccatccatattcgatatcaggattaggataacgagcacaaaagctcccactttccttcttc-gtgcaatcagcgtgagactgacataagtttgg 108  Q
    ||||||||| ||||||||  |||||| |||||||||||| ||||||||| |||||  |||||  ||| |||||||| |  ||||||||||| || ||| |    
T  20472265 aaaacaccagccatattcattatcagaattaggataacgcgcacaaaaggtccca-attcctctttctgtgcaatctgtatgagactgacaaaatttttg 20472167  T
Q  109 atgttcctc 117  Q
    |||||||||    
T  20472166 atgttcctc 20472158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 15107734 - 15107807
Alignment:
Q  41 ggataacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgagactgacataagtttggatgttc 114  Q
    |||||||||||||| |||||||||||| |||| || ||||| ||  | ||||| ||||||| |||||| |||||    
T  15107734 ggataacgagcacagaagctcccacttccctttttggtgcattcgacatgagattgacataggtttgggtgttc 15107807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 20460437 - 20460349
Alignment:
Q  30 tatcaggattaggataacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgagactgacataagtttggatgttcctca 118  Q
    ||||||||| | |||||||||| || ||||| ||| || |||||| |||||| ||| | || |||  ||||||||| ||||||||||||    
T  20460437 tatcaggatcaagataacgagcgcagaagcttccaattcccttctccgtgcattcaacatgtgacctacataagttaggatgttcctca 20460349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 5951050 - 5951151
Alignment:
Q  10 aaaacaccatccatattcgatatcaggattaggataacgagcacaaaagctcccactttccttcttcgtgcaatcagcgtgagactgacataagtttgga 109  Q
    ||||||||| ||||| || | |||| || ||||| || |||||||||||||||||||| |||| ||| |||| ||| | ||||| ||||||| ||| |||    
T  5951050 aaaacaccaaccataatcaacatcaagaataggagaatgagcacaaaagctcccacttcccttgttcatgcattcaacatgagagtgacatatgttagga 5951149  T
Q  110 tg 111  Q
    ||    
T  5951150 tg 5951151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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