View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18352_low_1 (Length: 638)

Name: NF18352_low_1
Description: NF18352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18352_low_1
NF18352_low_1
[»] chr7 (2 HSPs)
chr7 (13-624)||(6432437-6433048)
chr7 (159-244)||(42446332-42446416)
[»] chr4 (7 HSPs)
chr4 (126-365)||(1327216-1327455)
chr4 (126-365)||(44186063-44186302)
chr4 (148-297)||(4877777-4877926)
chr4 (196-254)||(48741972-48742030)
chr4 (374-450)||(1328975-1329051)
chr4 (166-234)||(37897946-37898014)
chr4 (317-365)||(44187563-44187611)
[»] chr8 (4 HSPs)
chr8 (452-624)||(26542261-26542426)
chr8 (18-297)||(26532183-26532471)
chr8 (364-475)||(26532557-26532669)
chr8 (176-248)||(13024762-13024834)
[»] scaffold0831 (2 HSPs)
scaffold0831 (157-238)||(1322-1403)
scaffold0831 (364-405)||(1136-1177)
[»] chr5 (4 HSPs)
chr5 (210-251)||(42411860-42411901)
chr5 (190-251)||(42840503-42840564)
chr5 (177-251)||(39724561-39724635)
chr5 (210-251)||(42414803-42414844)
[»] chr1 (1 HSPs)
chr1 (196-251)||(368826-368881)
[»] chr6 (1 HSPs)
chr6 (204-244)||(29012871-29012911)


Alignment Details
Target: chr7 (Bit Score: 584; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 13 - 624
Target Start/End: Original strand, 6432437 - 6433048
Alignment:
Q  13 aatatatggtttcgtttaacttgagcagtgaagtgttttctactacactcttaccttttgatatggaagatagttatcccgatgagtgggtagagagcta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6432437 aatatatggtttcgtttaacttgagcagtgaagtgttttctactaaactcttaccttttgatatggaagatagttatctcgatgagtgggtagagagcta 6432536  T
Q  113 cttggatttgacagtgttgaatggatccgtagctatgatctcaaagcatgcaaagacgacttcttttcacatatatgttttgtgtgaacttggtgtcaaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6432537 cttggatttgacagtgttgaatggatccgtagctatgatctcaaagcatgcaaagacgacttcttttcacatatatgttttgtgtgaacttggtgtcaaa 6432636  T
Q  213 gaatcatggaccaaactcttcattgtcggacccttacctagcgtaggtcgtactattggaataggaaagaagggtgatctattctgtcttaagaattgca 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6432637 gaatcatggaccaaactcttcattgtcggacccttacctagcgtaggtcgtcctattggaataggaaagaagggtgatctattctgtcttaagaattgca 6432736  T
Q  313 aagaactagtctgttttgatttaaacacccaaacaattgaaaatttgggtgttgtgacttggcaatttataggaaaaactttcttccaattggtcgaaag 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6432737 aagaactagtctgttttgatttaaacacccaaacaattgaaaatttgggtgttgtgacttggcaatttataggaaaaactttcttccaattggtcgaaag 6432836  T
Q  413 aggagttagttatttttgcatctcaagtttaaagctttttcccaagagggttataagtataattattagaatttaggattttattatgaagttgaatgtt 512  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6432837 aggagttagttatttttgcatctcaagtttaaagctttttctcaagagggttataagtataattattagaatttaggattttattatgaagttgaatgtt 6432936  T
Q  513 atgaagtcattacaatgcaagtaggcatttcaatttcacatattatgtttactatcttgtgtataagcaagaaacatttggcatatgaatctttctttac 612  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6432937 atgaagtcattacaatgcaagtaggcatttcaatttcacatattatgcgtactatcttgtgtatgagcaagaaacatttggcatatgaatctttctttac 6433036  T
Q  613 caatgttatttc 624  Q
    ||||||||||||    
T  6433037 caatgttatttc 6433048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 159 - 244
Target Start/End: Original strand, 42446332 - 42446416
Alignment:
Q  159 catgcaaagacgacttcttttcacatatatgttttgtgtgaacttggtgtcaaagaatcatggaccaaactcttcattgtcggacc 244  Q
    |||| ||||||| ||| |||||||||||   ||||| ||||||||| | |||| |||||||||||||||||| ||||||| |||||    
T  42446332 catgaaaagacggctt-ttttcacatatcaattttgggtgaacttgctatcaaggaatcatggaccaaactcgtcattgttggacc 42446416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 4e-49; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 126 - 365
Target Start/End: Original strand, 1327216 - 1327455
Alignment:
Q  126 gtgttgaatggatccgtagctatgatctcaaagcatgcaaagacgacttcttttcacatatatgttttgtgtgaacttggtgtcaaagaatcatggacca 225  Q
    ||||| ||||| | ||| ||||||||||||||||||| ||||||  ||||||||||||||||||||||| | ||||||||||| | |||||||||||| |    
T  1327216 gtgttaaatgggttcgttgctatgatctcaaagcatgtaaagacatcttcttttcacatatatgttttgggcgaacttggtgttagagaatcatggacta 1327315  T
Q  226 aactcttcattgtcggacccttacctagcgtaggtcgtactattggaataggaaagaagggtgatctattctgtcttaagaattgcaaagaactagtctg 325  Q
    |||||||||||||||||||||| ||| |||| |  ||| ||||||||  |||||| || || ||| |||||| ||| || |||  ||| ||| |||  ||    
T  1327316 aactcttcattgtcggacccttgcctggcgtggagcgtcctattggagcaggaaaaaaaggcgatatattctttctaaaaaatgacaatgaagtagcttg 1327415  T
Q  326 ttttgatttaaacacccaaacaattgaaaatttgggtgtt 365  Q
    |||||||||||| ||||||||||||||| |||||||||||    
T  1327416 ttttgatttaaatacccaaacaattgaagatttgggtgtt 1327455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 126 - 365
Target Start/End: Original strand, 44186063 - 44186302
Alignment:
Q  126 gtgttgaatggatccgtagctatgatctcaaagcatgcaaagacgacttcttttcacatatatgttttgtgtgaacttggtgtcaaagaatcatggacca 225  Q
    ||||| ||||| | ||| |||||||||||||| |||| ||||||  ||||||||||||||||||||||| | ||| ||||||| | |||||||||||| |    
T  44186063 gtgttaaatgggttcgttgctatgatctcaaaccatgtaaagacagcttcttttcacatatatgttttgggagaatttggtgttagagaatcatggacta 44186162  T
Q  226 aactcttcattgtcggacccttacctagcgtaggtcgtactattggaataggaaagaagggtgatctattctgtcttaagaattgcaaagaactagtctg 325  Q
    ||||||| |||||||||||||| |||||||| |   || || |||||  |||||| || | |||| |||||| | | || |||  ||| ||| |||  ||    
T  44186163 aactctttattgtcggacccttgcctagcgtggagtgtcctgttggagaaggaaaaaaagttgatatattctttataaaaaatgacaatgaaatagcttg 44186262  T
Q  326 ttttgatttaaacacccaaacaattgaaaatttgggtgtt 365  Q
    |||||||||||| || |||||||||||| || ||||||||    
T  44186263 ttttgatttaaatactcaaacaattgaagatctgggtgtt 44186302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 148 - 297
Target Start/End: Original strand, 4877777 - 4877926
Alignment:
Q  148 tgatctcaaagcatgcaaagacgacttcttttcacatatatgttttgtgtgaacttggtgtcaaagaatcatggaccaaactcttcattgtcggaccctt 247  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||| | ||||||||||| | |||||||||||| |||||||| ||| ||||||||||    
T  4877777 tgatctcaaagcatgtaaagacaacttcttttcacatatatgttttgggcgaacttggtgttagagaatcatggactaaactctttattatcggaccctt 4877876  T
Q  248 acctagcgtaggtcgtactattggaataggaaagaagggtgatctattct 297  Q
     |||||||| |  ||| || |||||  |||||| || |||||| ||||||    
T  4877877 gcctagcgtggagcgtcctgttggagcaggaaaaaaaggtgatatattct 4877926  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 48742030 - 48741972
Alignment:
Q  196 gtgaacttggtgtcaaagaatcatggaccaaactcttcattgtcggacccttacctagc 254  Q
    ||||||| ||||| || ||||| ||||| |||||||||||| | |||||||||||||||    
T  48742030 gtgaactcggtgtgaaggaatcttggactaaactcttcatttttggacccttacctagc 48741972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 374 - 450
Target Start/End: Original strand, 1328975 - 1329051
Alignment:
Q  374 gcaatttataggaaaaactttcttccaattggtcgaaagaggagttagttatttttgcatctcaagtttaaagcttt 450  Q
    |||||||||| ||||||  ||||||||||||| ||||  | || |||||| | |||| ||| |||||||||||||||    
T  1328975 gcaatttataagaaaaatcttcttccaattggccgaattaagaattagttgtatttggatcccaagtttaaagcttt 1329051  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 166 - 234
Target Start/End: Original strand, 37897946 - 37898014
Alignment:
Q  166 agacgacttcttttcacatatatgttttgtgtgaacttggtgtcaaagaatcatggaccaaactcttca 234  Q
    |||||||| |||||||| |||  |||||| | ||||||||| | || ||||| ||||||||||||||||    
T  37897946 agacgactacttttcacgtatcagttttgggcgaacttggtatgaaggaatcgtggaccaaactcttca 37898014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 317 - 365
Target Start/End: Original strand, 44187563 - 44187611
Alignment:
Q  317 actagtctgttttgatttaaacacccaaacaattgaaaatttgggtgtt 365  Q
    ||||| |||||||||||||||  |||||||||||||| || ||||||||    
T  44187563 actagactgttttgatttaaatgcccaaacaattgaagatatgggtgtt 44187611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 452 - 624
Target Start/End: Original strand, 26542261 - 26542426
Alignment:
Q  452 tcccaagagggttataagtataattattagaatttaggattttattatgaagttgaatgttatgaagtcattacaatgcaagtaggcatttcaatttcac 551  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||  ||||||||| |||||||||| || |||||||| |||||       |||| |    
T  26542261 tcccaagagagttataagtacaattattagaatttaggattttatta-caagttgaatattatgaagtcgttgcaatgcaaataggc------gtttccc 26542353  T
Q  552 atattatgtttactatcttgtgtataagcaagaaacatttggcatatgaatctttctttaccaatgttatttc 624  Q
    ||||||| |||||||||  ||||||||| ||||||   ||||| || |||||||||||||||| | |||||||    
T  26542354 atattatatttactatcaagtgtataagaaagaaattattggcttaagaatctttctttaccatttttatttc 26542426  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 18 - 297
Target Start/End: Original strand, 26532183 - 26532471
Alignment:
Q  18 atggtttcgtttaacttgagcagtgaagtgttttctactacactcttaccttttgatatggaagatagttatcccgatgagtgggtaga---------ga 108  Q
    |||||||| ||||||||||||| |||  |||||||||||||||| ||||| || |||||| ||||||| ||||  ||||| ||||| ||         ||    
T  26532183 atggtttcttttaacttgagcactgagatgttttctactacactgttacccttggatatgcaagatagatatcatgatgaatgggtggatatgggcagga 26532282  T
Q  109 gctacttggatttgacagtgttgaatggatccgtagctatgatctcaaagcatgcaaagacgacttcttttcacatatatgttttgtgtgaacttggtgt 208  Q
    | ||||| || |||   ||||| ||||| |  || |||||||||| |||||||| ||||||  |  |||||||||||||||||||| |||||| ||||      
T  26532283 gatacttagacttggtggtgttaaatgggtttgttgctatgatcttaaagcatgtaaagacagcagcttttcacatatatgttttgggtgaacctggtca 26532382  T
Q  209 caaagaatcatggaccaaactcttcattgtcggacccttacctagcgtaggtcgtactattggaataggaaagaagggtgatctattct 297  Q
     | |||||||||||| ||||||||||| ||||||||||| ||||  ||  | ||| || |||||  |||||| || |||||||||||||    
T  26532383 tagagaatcatggactaaactcttcatagtcggacccttgcctaatgtttggcgtcctcttggagcaggaaaaaaaggtgatctattct 26532471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 364 - 475
Target Start/End: Original strand, 26532557 - 26532669
Alignment:
Q  364 ttgtgacttggcaatttataggaaaaactttcttccaattggtcgaaagaggagttagttatttttgca-tctcaagtttaaagctttttcccaagaggg 462  Q
    ||||||||| | |||||||  ||||||||||||||| |||||||| || |  | ||| |||||||| || || |||||| |||||||||  |||||||||    
T  26532557 ttgtgactttgaaatttatcagaaaaactttcttccgattggtcggaaaaaaaattaattattttttcattcccaagttcaaagcttttatccaagaggg 26532656  T
Q  463 ttataagtataat 475  Q
    || ||||||||||    
T  26532657 ttttaagtataat 26532669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 176 - 248
Target Start/End: Complemental strand, 13024834 - 13024762
Alignment:
Q  176 ttttcacatatatgttttgtgtgaacttggtgtcaaagaatcatggaccaaactcttcattgtcggaccctta 248  Q
    ||||||||| |  |||||| ||||||| |||||||||||||| ||||| ||| ||||  |||| |||||||||    
T  13024834 ttttcacatttgggttttgggtgaactcggtgtcaaagaatcgtggactaaattctttgttgttggaccctta 13024762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0831 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: scaffold0831
Description:

Target: scaffold0831; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 1403 - 1322
Alignment:
Q  157 agcatgcaaagacgacttcttttcacatatatgttttgtgtgaacttggtgtcaaagaatcatggaccaaactcttcattgt 238  Q
    |||||| |||||| |||| ||||||||||||||||||| |||||| ||| || |  ||||| ||||| ||||||||||||||    
T  1403 agcatgtaaagacaacttattttcacatatatgttttgggtgaacctggcgttagtgaatcgtggacaaaactcttcattgt 1322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0831; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 405
Target Start/End: Complemental strand, 1177 - 1136
Alignment:
Q  364 ttgtgacttggcaatttataggaaaaactttcttccaattgg 405  Q
    |||||||||||||||||||| ||||||| ||||||| |||||    
T  1177 ttgtgacttggcaatttataagaaaaaccttcttcccattgg 1136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 42411860 - 42411901
Alignment:
Q  210 aaagaatcatggaccaaactcttcattgtcggacccttacct 251  Q
    |||||||||||||| ||||||||||||||||| |||||||||    
T  42411860 aaagaatcatggactaaactcttcattgtcgggcccttacct 42411901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 42840564 - 42840503
Alignment:
Q  190 ttttgtgtgaacttggtgtcaaagaatcatggaccaaactcttcattgtcggacccttacct 251  Q
    ||||| ||||||||||||| |||||||||||||| ||| |||| ||||| || |||||||||    
T  42840564 ttttgggtgaacttggtgtaaaagaatcatggactaaagtctttattgttggtcccttacct 42840503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 39724635 - 39724561
Alignment:
Q  177 tttcacatatatgttttgtgtgaacttggtgtcaaagaatcatggaccaaactcttcattgtcggacccttacct 251  Q
    ||||||||||   ||||| | ||||| ||| | |||||||||||||| |||||||||||||| ||||| ||||||    
T  39724635 tttcacatatcaattttgggggaactcggtataaaagaatcatggactaaactcttcattgttggacctttacct 39724561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 42414803 - 42414844
Alignment:
Q  210 aaagaatcatggaccaaactcttcattgtcggacccttacct 251  Q
    |||||||||||||| |||||||||||| |||| |||||||||    
T  42414803 aaagaatcatggactaaactcttcattatcgggcccttacct 42414844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 251
Target Start/End: Original strand, 368826 - 368881
Alignment:
Q  196 gtgaacttggtgtcaaagaatcatggaccaaactcttcattgtcggacccttacct 251  Q
    ||||| ||||||| || |||||||||| ||||||||||||||| ||||| ||||||    
T  368826 gtgaaattggtgtgaaggaatcatggatcaaactcttcattgttggaccattacct 368881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 29012871 - 29012911
Alignment:
Q  204 ggtgtcaaagaatcatggaccaaactcttcattgtcggacc 244  Q
    ||||| || |||||||||||||||||||||||||| |||||    
T  29012871 ggtgtgaaggaatcatggaccaaactcttcattgttggacc 29012911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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