View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18352_low_10 (Length: 335)
Name: NF18352_low_10
Description: NF18352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18352_low_10 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 6 - 335
Target Start/End: Original strand, 52925784 - 52926113
Alignment:
| Q |
6 |
atggacatcatcaaggttgcacagcctccaaaagtttctcataaacttgtctagcagtgagatcctccacctgaaatgatggtgaaaattagcgttagta |
105 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
52925784 |
atggacagcatcaaggttgcacagcctccaaaagtttctcataaacttgtctagcagtgagatcctccacctgaaatgatggtgaaaattagcattagta |
52925883 |
T |
|
| Q |
106 |
tatatgtttgttgagaaatacttactacttggttaagttgaagaagacatgactgaccacaagaagctttgacttgttattccatcctctctgaagagtc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52925884 |
tatatgtttgttgagaaatacttactacttggttaagttgaagaagacatgactgaccacaagaagctttgacttgttattccatcctctctgaagagtc |
52925983 |
T |
|
| Q |
206 |
atttgactcaatcttaaacctaaaacctttcccataaactccaaaagttcattgttagcttctccacgagcagcaggagcagctacagtgacacgaacat |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52925984 |
atttgactcaatcttaaacctaaaacctttcccataaactccaaaagttcattgttagcttctccacgagcagcaggagcagctacagtgacacgaacat |
52926083 |
T |
|
| Q |
306 |
catcagcatttactctggtggttgcggagc |
335 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |
|
|
| T |
52926084 |
catcagcatttactctggtgattgcggagc |
52926113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University