View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18352_low_11 (Length: 329)
Name: NF18352_low_11
Description: NF18352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18352_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 47 - 295
Target Start/End: Original strand, 21418101 - 21418359
Alignment:
| Q |
47 |
tggtttttgccggtgatcttttaattaagtagtttaacttgaatcgaataatnnnnnnnntaaaagagaaaacctatatattgctcctaaaagtgagaag |
146 |
Q |
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| T |
21418101 |
tggttttcgccagtgatcttttaattaagtagtttaacttgaatcgaataataaaaaaaattaaagagaaaacctatatattgctcctaaaagtgagaag |
21418200 |
T |
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| Q |
147 |
acaagttcataannnnnnnncttcataatattgtaa-nnnnnnngaaggatagatgaatattattagattattagtaaaaatttgagtta--------tt |
237 |
Q |
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|||||||||| | || |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
21418201 |
acaagttcatcatttttt---tttataatattgtaattttttttgaaggatagatgaatattattaggttattagtaaaaatttgagttatgttagtttt |
21418297 |
T |
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| Q |
238 |
cagatgtttaagactttggatt--cacaccggttat--gagaattccgcatttcacgtattt |
295 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
21418298 |
cagatgtttaagactttggattcacacaccggttatgagagaattccgcatttcacgtattt |
21418359 |
T |
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