View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18352_low_14 (Length: 294)
Name: NF18352_low_14
Description: NF18352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18352_low_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 107 - 282
Target Start/End: Complemental strand, 4065269 - 4065094
Alignment:
| Q |
107 |
ttggtctgcatagggcttcttgcacattgatgaataccctccagatgctaatcaaggacttgatatcccatcagcaataataagctttcctgacttccat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4065269 |
ttggtctgcatagggcttcttgcacattgatgaataccctccagatgctactcaaggacttgatatcccatcagcaataataagctttcctgacttccat |
4065170 |
T |
|
| Q |
207 |
gctggtttgcaattttctgatgactctataaccaagtcgccaatgctgtctaaattccaggttatttgaatctctg |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4065169 |
gctggtttgcaattttctgatgactctataaccaagtcgccaatgctgtctaaattccaggttatttgaatctctg |
4065094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 115 - 275
Target Start/End: Complemental strand, 4058915 - 4058755
Alignment:
| Q |
115 |
catagggcttcttgcacattgatgaataccctccagatgctaatcaaggacttgatatcccatcagcaataataagctttcctgacttccatgctggttt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| || || ||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4058915 |
catagggcttcttgcacattgatgaatatcctccagatgccaaccagggatttgacatcccatcagcaataataagctttcctgacttccatgctggttt |
4058816 |
T |
|
| Q |
215 |
gcaattttctgatgactctataaccaagtcgccaatgctgtctaaattccaggttatttga |
275 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||| | |||||||| |||||||||||| |
|
|
| T |
4058815 |
gcaattttctaatgactctataagcaagtcgccaatgttatctaaattacaggttatttga |
4058755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 4065375 - 4065334
Alignment:
| Q |
1 |
aatcggctgtattaaatatcgagtttgataaggtgtgttcaa |
42 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4065375 |
aatcggctgtattaaatatcgagtttgataaggtgtgttcaa |
4065334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University