View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18352_low_16 (Length: 238)
Name: NF18352_low_16
Description: NF18352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18352_low_16 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 47 - 238
Target Start/End: Original strand, 40647726 - 40647917
Alignment:
| Q |
47 |
aaaagatagatcttaattactaaacatacaaagatgaactcctatctcataaaagacttgggatacaagaaagtcatacctatctgtcagcccaacagtt |
146 |
Q |
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| T |
40647726 |
aaaagatagattgtaattactaaacatacaaaggtgaactcctatctcataaaagacttgggatacaagaaagtcatacctatctgtcagcccaacagtt |
40647825 |
T |
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| Q |
147 |
gctgcatcagctggcacaaaactaccaatgtgggccaggaaaacaataatagccacctggcaaaggaaaacacttggttattgttttttatc |
238 |
Q |
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| T |
40647826 |
gctgcatcagctggcacaaaactaccaatgtgggccaggaaaacaataatagccacctggcaaaggaaaacacttggttattgttttttatc |
40647917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 40647681 - 40647713
Alignment:
| Q |
1 |
aaaatctgttaacatcatgattgaaatagttta |
33 |
Q |
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| T |
40647681 |
aaaatctgttaacattatgattgaaatagttta |
40647713 |
T |
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