View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18352_low_2 (Length: 632)

Name: NF18352_low_2
Description: NF18352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18352_low_2
NF18352_low_2
[»] chr6 (9 HSPs)
chr6 (14-617)||(16571484-16572098)
chr6 (14-309)||(16873484-16873779)
chr6 (328-437)||(16873749-16873858)
chr6 (561-617)||(16873865-16873921)
chr6 (562-617)||(16580005-16580060)
chr6 (562-617)||(16615320-16615375)
chr6 (563-617)||(16783479-16783533)
chr6 (422-463)||(16832438-16832479)
chr6 (346-394)||(16783878-16783926)
[»] scaffold0256 (4 HSPs)
scaffold0256 (14-308)||(11940-12235)
scaffold0256 (332-513)||(11784-11965)
scaffold0256 (534-617)||(11658-11741)
scaffold0256 (14-80)||(14399-14465)
[»] chr2 (6 HSPs)
chr2 (14-197)||(32791581-32791763)
chr2 (23-197)||(21627848-21628022)
chr2 (14-207)||(235643-235836)
chr2 (328-387)||(32791897-32791956)
chr2 (348-394)||(21628161-21628207)
chr2 (214-308)||(32791833-32791926)
[»] chr7 (2 HSPs)
chr7 (14-197)||(48300076-48300259)
chr7 (335-370)||(48299915-48299950)
[»] chr1 (2 HSPs)
chr1 (14-207)||(7389969-7390162)
chr1 (231-310)||(7390206-7390284)


Alignment Details
Target: chr6 (Bit Score: 471; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 14 - 617
Target Start/End: Original strand, 16571484 - 16572098
Alignment:
Q  14 cacagatacattttaacagggctatgtcacagttaggcctatgtgctattcgtgctgggctggtttctgaagcacatgactgtctgtctgaactttattc 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||    
T  16571484 cacagatacattttaacagggctatgtcacagttaggcctatgtgctattcgtgctgggctggtttctgaagcacatgactgt----ctgaactttattc 16571579  T
Q  114 tggtagaaggttgaaagaattgctcgcacaaggagttgtgcggagtcgttatcatgagaagactccaaaacaggtactaaatcctatcttttttaaaatg 213  Q
    || | ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16571580 tgctggaaggttgaaagaattgctcgcacaaggagttgcgcggagtcgttatcatgaaaagactccaaaacaggtactaaatcctatcttttttaaaatg 16571679  T
Q  214 tatgtgcttacaatatatgatgttcagtaatatataattttaatagatccaatgtcactgttcaaagaaattcatctttgatttttcatagaaatagtat 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  16571680 tatgtgcttacaatatatgatgttcagtaatatataattttaatagatccaatgtcactgttcaaagaaattcctgtttgatttttcatagaaatagtat 16571779  T
Q  314 tgatcagttttaatagaaattcctgtttgatttttcatagaaatgatttaaaatcaatgttgatctgaactgcagattaggcacattatttctctttaca 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16571780 tgatcagttttaatagaaattcctgtttgatttttcatagaaatgatttaaaatcaatgttgatctgaactgcagattaggcacattatttctctttaca 16571879  T
Q  414 tggtttatcagttttgaacagaaatctgatttgaatattagttgcatatttccctgttctcttttctgctgaattaattatttttgaaatttggtca--- 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||       
T  16571880 tggtttatcagttttgaacagaaatctgatttgaatattagttgcatatttccttgttctcttttctgctgaattaattacatttgaaatttggtcaatg 16571979  T
Q  511 -----------atgtaatta-attcagcagaaaagatcacaaaggcatgaacaccttgttggtttggattaatcaatgcttgatttcttaagaaacattc 598  Q
               |||| |||| |||  ||   ||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||    
T  16571980 ctctgtattttatgtgattacattatgcgttaaacatcacaaaggcatgaacaccttgttcgtttggattaatcaatgcttaatttctttagaaacattc 16572079  T
Q  599 tgtagtacccttcctaaat 617  Q
    |||||||||||||||||||    
T  16572080 tgtagtacccttcctaaat 16572098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 14 - 309
Target Start/End: Original strand, 16873484 - 16873779
Alignment:
Q  14 cacagatacattttaacagggctatgtcacagttaggcctatgtgctattcgtgctgggctggtttctgaagcacatgactgtctgtctgaactttattc 113  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||     
T  16873484 cacagatacgttttaacagggctatgtcacagttaggcctatgtgcttttcctgctgggctggtttctgaagcacatgactgtctgtctgaactttattt 16873583  T
Q  114 tggtagaaggttgaaagaattgctcgcacaaggagttgtgcggagtcgttatcatgagaagactccaaaacaggtactaaatcctatcttttttaaaatg 213  Q
     ||| ||||||||||||||||||| ||||||||||||| |||||||||||||||| | |||||| || |||||||||||||||| |||||||||||||||    
T  16873584 cggtggaaggttgaaagaattgcttgcacaaggagttgcgcggagtcgttatcataaaaagacttcagaacaggtactaaatcccatcttttttaaaatg 16873683  T
Q  214 tatgtgcttacaatatatgatgttcagtaatatataattttaatagatccaatgtcactgttcaaagaaattcatctttgatttttcatagaaata 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||| |||||||||||||||    
T  16873684 tatgtgcttacaatatatgatgttcagtaatatataattttaatagatccaatgtcactgttcaaagaagttcctgtttgctttttcatagaaata 16873779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 328 - 437
Target Start/End: Original strand, 16873749 - 16873858
Alignment:
Q  328 agaaattcctgtttgatttttcatagaaatgatttaaaatcaatgttgatctgaactgcagattaggcacattatttctctttacatggtttatcagttt 427  Q
    |||| |||||||||| |||||||||||||| ||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||    
T  16873749 agaagttcctgtttgctttttcatagaaataattaaaaatcaatgttgatctgaagtgcagtttaggcacattatttctctttacatggttgatcagttt 16873848  T
Q  428 tgaacagaaa 437  Q
    ||||||||||    
T  16873849 tgaacagaaa 16873858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 561 - 617
Target Start/End: Original strand, 16873865 - 16873921
Alignment:
Q  561 tttggattaatcaatgcttgatttcttaagaaacattctgtagtacccttcctaaat 617  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  16873865 tttggattaatcaatgcttaatttctttagaaacattctgtagtacccttcctaaat 16873921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 562 - 617
Target Start/End: Original strand, 16580005 - 16580060
Alignment:
Q  562 ttggattaatcaatgcttgatttcttaagaaacattctgtagtacccttcctaaat 617  Q
    ||||||||||||||| || |||| || |||||||||||||||||||||||||||||    
T  16580005 ttggattaatcaatgattaatttatttagaaacattctgtagtacccttcctaaat 16580060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 562 - 617
Target Start/End: Complemental strand, 16615375 - 16615320
Alignment:
Q  562 ttggattaatcaatgcttgatttcttaagaaacattctgtagtacccttcctaaat 617  Q
    ||||||||||||||| || |||| || |||||||||||||||||||||||||||||    
T  16615375 ttggattaatcaatgattaatttatttagaaacattctgtagtacccttcctaaat 16615320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 563 - 617
Target Start/End: Complemental strand, 16783533 - 16783479
Alignment:
Q  563 tggattaatcaatgcttgatttcttaagaaacattctgtagtacccttcctaaat 617  Q
    ||||||||||||||||| ||||||  ||||||||||||||||| |||||||||||    
T  16783533 tggattaatcaatgctttatttctctagaaacattctgtagtatccttcctaaat 16783479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 463
Target Start/End: Complemental strand, 16832479 - 16832438
Alignment:
Q  422 cagttttgaacagaaatctgatttgaatattagttgcatatt 463  Q
    ||||| ||||||||||| |||||||| |||||||||||||||    
T  16832479 cagttatgaacagaaatttgatttgattattagttgcatatt 16832438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 346 - 394
Target Start/End: Complemental strand, 16783926 - 16783878
Alignment:
Q  346 tttcatagaaatgatttaaaatcaatgttgatctgaactgcagattagg 394  Q
    |||||| |||| |||||||||||||||||||||| || ||||| |||||    
T  16783926 tttcattgaaaggatttaaaatcaatgttgatcttaattgcagtttagg 16783878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 308
Target Start/End: Complemental strand, 12235 - 11940
Alignment:
Q  14 cacagatacattttaacagggctatgtcacagttaggcctatgtgctattcgtgctgggctggtttctgaagcacatgactgtctgtctgaactttattc 113  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12235 cacagatacgttttaacagggctatgtcatagttaggcctatgtgcttttcgtgctgggctggtttctgaagcacatgactgtcagtctgaactttattc 12136  T
Q  114 tggtagaaggttgaaagaattgctcgcacaaggagttgtgcggagtcgttatcatgagaagactccaaaacaggtactaaatcctatcttttttaaaatg 213  Q
     ||| ||||||||||||||||||||  |||||||||||  | || |||||||||||| ||||||| | |||||||||||||||| |||||||||||||||    
T  12135 cggtggaaggttgaaagaattgctcatacaaggagttgcacagaatcgttatcatgaaaagactctagaacaggtactaaatcccatcttttttaaaatg 12036  T
Q  214 tatgtgcttacaatatatgatgttcagtaatatataattttaatagatccaatgtcact-gttcaaagaaattcatctttgatttttcatagaaat 308  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||| ||||| |||| | |||||||||||||||||||    
T  12035 tatgtgcttacaatatatggtgttcagtaatatataattttaatagatcaaatgtcactggtttaaagatattcctgtttgatttttcatagaaat 11940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 332 - 513
Target Start/End: Complemental strand, 11965 - 11784
Alignment:
Q  332 attcctgtttgatttttcatagaaatgatttaaaatcaatgttgatctgaactgcagattaggcacattatttctctttacatggtttatcagttttgaa 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||| |||| ||||||||||||    
T  11965 attcctgtttgatttttcatagaaatgatttaaaatcaatgttgatctgaattgcagtttaggcacattattactctttacacggttgatcagttttgaa 11866  T
Q  432 cagaaatctgatttgaatattagttgcatatttccctgttctcttttctgctgaattaattatttttgaaatttggtcaatg 513  Q
    ||||||| ||||||||||||||  |||||||| ||||||||||||||||||||||| |||||  |||||||||| |||||||    
T  11865 cagaaatttgatttgaatattaactgcatattgccctgttctcttttctgctgaatcaattacatttgaaattttgtcaatg 11784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 534 - 617
Target Start/End: Complemental strand, 11741 - 11658
Alignment:
Q  534 atcacaaaggcatgaacaccttgttggtttggattaatcaatgcttgatttcttaagaaacattctgtagtacccttcctaaat 617  Q
    ||||||||||| |||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11741 atcacaaaggcttgaacaccttgttcctttggattaatcaatgcttgatttctttagaaacattctgtagtacccttcctaaat 11658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 14465 - 14399
Alignment:
Q  14 cacagatacattttaacagggctatgtcacagttaggcctatgtgctattcgtgctgggctggtttc 80  Q
    |||||||||||| |||||||||||||||||| |||||  |||||||| |||||| |||| |||||||    
T  14465 cacagatacattctaacagggctatgtcacaattaggtgtatgtgcttttcgtgatgggatggtttc 14399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 2e-63; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 32791581 - 32791763
Alignment:
Q  14 cacagatacattttaacagggctatgtcacagttaggcctatgtgctattcgtgctgggctggtttctgaagcacatgactgtctgtctgaactttattc 113  Q
    ||||||||| |||||||||||||||||||| |||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  32791581 cacagatactttttaacagggctatgtcac-gttaggtctatgtgcttttcgtgctgggctgatttctgaagcacatgactgtctgtctgaactttatcc 32791679  T
Q  114 tggtagaaggttgaaagaattgctcgcacaaggagttgtgcggagtcgttatcatgagaagactccaaaacaggtactaaatcc 197  Q
     ||| ||||| |||||||||||||||||||||||||||  ||||||| ||||||||| ||||||||||| ||||||||||||||    
T  32791680 cggtggaagggtgaaagaattgctcgcacaaggagttgcacggagtcattatcatgaaaagactccaaagcaggtactaaatcc 32791763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 23 - 197
Target Start/End: Original strand, 21627848 - 21628022
Alignment:
Q  23 attttaacagggctatgtcacagttaggcctatgtgctattcgtgctgggctggtttctgaagcacatgactgtctgtctgaactttattctggtagaag 122  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||| ||| |||||||||||||||| |||||||||||||||||| | ||| ||||    
T  21627848 attttaacagggctatgtcacagttaggtctatgtgcttttcgtgctggactgatttctgaagcacatgaatgtctgtctgaactttatcccggtggaag 21627947  T
Q  123 gttgaaagaattgctcgcacaaggagttgtgcggagtcgttatcatgagaagactccaaaacaggtactaaatcc 197  Q
    | ||| |||||||||||||||||||||||  |||||| |||||||||| || |||||| |||||||| |||||||    
T  21627948 ggtgagagaattgctcgcacaaggagttgcacggagttgttatcatgaaaaaactccagaacaggtattaaatcc 21628022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 14 - 207
Target Start/End: Complemental strand, 235836 - 235643
Alignment:
Q  14 cacagatacattttaacagggctatgtcacagttaggcctatgtgctattcgtgctgggctggtttctgaagcacatgactgtctgtctgaactttattc 113  Q
    |||| |||| ||||||||||||||||||||||||||| ||||||||| |||| | |||||||||||||||||| |||| |||| |||| |||||||||||    
T  235836 cacaaatactttttaacagggctatgtcacagttaggtctatgtgcttttcgggttgggctggtttctgaagcgcatggctgtttgtcggaactttattc 235737  T
Q  114 tggtagaaggttgaaagaattgctcgcacaaggagttgtgcggagtcgttatcatgagaagactccaaaacaggtactaaatcctatctttttt 207  Q
    |||| |  |  ||||||||||||| || |||||||||   | ||| ||||||||||| ||||||||| |||||||||||||||| | |||||||    
T  235736 tggtgggcgtgtgaaagaattgcttgcgcaaggagtttcacagagccgttatcatgaaaagactccagaacaggtactaaatcccagctttttt 235643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 387
Target Start/End: Original strand, 32791897 - 32791956
Alignment:
Q  328 agaaattcctgtttgatttttcatagaaatgatttaaaatcaatgttgatctgaactgca 387  Q
    |||||||  |||| |||||||||||||||| |||||||||||||||||||||||| ||||    
T  32791897 agaaatttatgttagatttttcatagaaattatttaaaatcaatgttgatctgaattgca 32791956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 348 - 394
Target Start/End: Original strand, 21628161 - 21628207
Alignment:
Q  348 tcatagaaatgatttaaaatcaatgttgatctgaactgcagattagg 394  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||    
T  21628161 tcatagaaatgatttaaaatcaatgttgatctgaattgcagtttagg 21628207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 308
Target Start/End: Original strand, 32791833 - 32791926
Alignment:
Q  214 tatgtgcttacaatatatgatgttcagtaatatataattttaatagatccaatgtcactg-ttcaaagaaattcatctttgatttttcatagaaat 308  Q
    ||||||| |||||||||||||||| | ||  |||||||| |||||||||| | ||||||| || ||||||||| || || ||||||||||||||||    
T  32791833 tatgtgcatacaatatatgatgttgaata--atataattgtaatagatccgaagtcactgctttaaagaaatttatgttagatttttcatagaaat 32791926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 9e-47; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 48300259 - 48300076
Alignment:
Q  14 cacagatacattttaacagggctatgtcacagttaggcctatgtgctattcgtgctgggctggtttctgaagcacatgactgtctgtctgaactttattc 113  Q
    |||||||||  |||||||||||||||||||||||||| ||||||||| |||||| ||| ||||||||||||||||||| |||| ||||||||||||||||    
T  48300259 cacagatactctttaacagggctatgtcacagttaggtctatgtgcttttcgtgttggcctggtttctgaagcacatggctgtttgtctgaactttattc 48300160  T
Q  114 tggtagaaggttgaaagaattgctcgcacaaggagttgtgcggagtcgttatcatgagaagactccaaaacaggtactaaatcc 197  Q
    |||| || || |||||||| |||| ||||||||||||   | ||  ||||||||||| ||||||||| |||||||||| |||||    
T  48300159 tggtggacgggtgaaagaactgcttgcacaaggagtttcacagaaccgttatcatgaaaagactccagaacaggtactcaatcc 48300076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 370
Target Start/End: Complemental strand, 48299950 - 48299915
Alignment:
Q  335 cctgtttgatttttcatagaaatgatttaaaatcaa 370  Q
    ||||||||||||||||||||||| ||||||||||||    
T  48299950 cctgtttgatttttcatagaaataatttaaaatcaa 48299915  T

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Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 7389969 - 7390162
Alignment:
Q  14 cacagatacattttaacagggctatgtcacagttaggcctatgtgctattcgtgctgggctggtttctgaagcacatgactgtctgtctgaactttattc 113  Q
    |||| |||| ||||||||||||||||||||||||||| || |||||| |||| |||||||||||||||||||| |||| |||| ||||||||||||||||    
T  7389969 cacaaatactttttaacagggctatgtcacagttaggtctttgtgcttttcgggctgggctggtttctgaagcgcatggctgtttgtctgaactttattc 7390068  T
Q  114 tggtagaaggttgaaagaattgctcgcacaaggagttgtgcggagtcgttatcatgagaagactccaaaacaggtactaaatcctatctttttt 207  Q
    |||| || || |||| |||||||| || |||||||||   | ||| ||||||||||| ||||| ||| |||||||||||||||| | |||||||    
T  7390069 tggtggacgggtgaaggaattgcttgcgcaaggagtttcacagagccgttatcatgaaaagaccccagaacaggtactaaatcccagctttttt 7390162  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 231 - 310
Target Start/End: Original strand, 7390206 - 7390284
Alignment:
Q  231 tgatgttcagtaatatataattttaatagatccaatgtcactgttc-aaagaaattcatctttgatttttcatagaaatag 310  Q
    ||||||||||||||||  ||||||||||||||||||||||||| || ||||||||   | |||||||||||||||||||||    
T  7390206 tgatgttcagtaatat--aattttaatagatccaatgtcactgctctaaagaaatctctgtttgatttttcatagaaatag 7390284  T

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