View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18352_low_20 (Length: 210)
Name: NF18352_low_20
Description: NF18352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18352_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 7e-85; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 26755290 - 26755448
Alignment:
| Q |
1 |
aatgcttatattggttcctccacttgcaatttttgtatacaatttgagttttgcaatacaactttagttcagtatttaaagatgttataacaacatagta |
100 |
Q |
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| T |
26755290 |
aatgcttatattggttcctccacttgcaatttttgtatacaatttgagttttgcaatacaactttagttcagtatttaaagatgttataacaacatagta |
26755389 |
T |
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| Q |
101 |
atttattctcatcagatttacaattttgatatccaatagctcttgatctatttttagat |
159 |
Q |
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| T |
26755390 |
atttattctcatcagatttacaattttgatatccaatagctcttgatctatttttagat |
26755448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 196
Target Start/End: Original strand, 26755473 - 26755504
Alignment:
| Q |
165 |
aactacctagcactgccgtcttatttcatctc |
196 |
Q |
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| T |
26755473 |
aactacctagcactgccgtcttatttcatctc |
26755504 |
T |
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