View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18352_low_3 (Length: 585)
Name: NF18352_low_3
Description: NF18352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18352_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 1e-82; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 376 - 575
Target Start/End: Original strand, 37215903 - 37216100
Alignment:
| Q |
376 |
taaccaaataaaaatgcaagaatatacaaacctcttgaacagttttagaccatttggagttccacatctgaaactgaggcagatctctgatttcatggtt |
475 |
Q |
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| T |
37215903 |
taaccaaataaaaatgcaagaatatacaaacctcttgagcagttttagaccatttggagttccacatctgaaaccaaggcagatct--gatttcatggtt |
37216000 |
T |
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| Q |
476 |
gcagtcatagtaggagtttcacccctgaaatcgataaatgcaactcatgtaaatataacataattaaaattgnnnnnnngtgtgcatataatcccctatg |
575 |
Q |
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| T |
37216001 |
gcagtcatagtaggagtttcacccctgaaatcgataaatgcaactcatgtaaatataacataattaaaattgtttttttgtgtgcatataatcccctatg |
37216100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 314 - 364
Target Start/End: Original strand, 37215072 - 37215122
Alignment:
| Q |
314 |
gcatgtgaacaccaaatgatattgaatctacacttacatgttaattaatga |
364 |
Q |
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| T |
37215072 |
gcatgtgaacaccaaatgatattgaatctacacttacatgttaattaatga |
37215122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 242 - 303
Target Start/End: Original strand, 37215406 - 37215465
Alignment:
| Q |
242 |
ttccacccctgaaatttgtaagtgcaactcatgtgtaaatatacataattaaaattgcatac |
303 |
Q |
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| T |
37215406 |
ttccatccctgaaatttgtaagtgcaactca--tgtaaatatacgtaattaaaattgcatac |
37215465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 37216015 - 37216072
Alignment:
| Q |
51 |
agtttgacccctgaaattgatagatgtgactcatgtaaatatagcataattaaaattg |
108 |
Q |
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| T |
37216015 |
agtttcacccctgaaatcgataaatgcaactcatgtaaatataacataattaaaattg |
37216072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 37215482 - 37215529
Alignment:
| Q |
314 |
gcatgtgaacaccaaatgatattgaatctacacttacatgttaattaatg |
363 |
Q |
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| T |
37215482 |
gcatgtgagaaccaaatgatattgaatct--acttacatgttaattaatg |
37215529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 37218402 - 37218447
Alignment:
| Q |
57 |
acccctgaaattgatagatgtgactcatgtaaatatagcataattaa |
103 |
Q |
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| T |
37218402 |
acccctgaaattgataaatgtga-tcatgtaaatataacataattaa |
37218447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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