View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18352_low_5 (Length: 491)
Name: NF18352_low_5
Description: NF18352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18352_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 489
Target Start/End: Complemental strand, 21732581 - 21732079
Alignment:
| Q |
1 |
tggagaagaaaaagaaacagtgagaacatcttagagggattcgtagtaattcatagctgaatcaatattcaatagtgatgttctaaaggtgtaaactcga |
100 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
21732581 |
tggagaagaaaaagaaacagtgagaatatcttagagggattcgtagtaattcatagctgaatcaata-------gtgatgttctaaaggtgtaaactcga |
21732489 |
T |
|
| Q |
101 |
atcatatagtgatctttcagtcagattctatcccggagacatggacaccggacatgacactggcacgtcgacaccggtaggaatttgaaaaaatgacata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
21732488 |
atcatatagtgatctttcagtcagattctatcccggagacatggacaccggacatgacactggcgcgtcgacaccggtaggaatttgaaaaaatgacata |
21732389 |
T |
|
| Q |
201 |
attgattgtcat-----------------tgctacggagcgtaggagcaaatcactctgaacttccttaacaatttctggtgttctctc----atctttt |
279 |
Q |
| |
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||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
21732388 |
attgattgtaatcacatgtgtcgtgtcggtgctacggagcgtaggagcaaatcactctgaacttccttaacaatttctggtgctctctctttcatctttt |
21732289 |
T |
|
| Q |
280 |
ttagtcttttcttgctatattgaatcttagatcagtaagaataattgttctacaggatctgctagcatttcttattgtgtgttttcaggttttgtcgtta |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
21732288 |
ttagtcttttcttgctatattgaatcttagatcagtaagaataattgttctacaggatctgctagcatttcttattgtgtgttttcaggtttcgtcgtta |
21732189 |
T |
|
| Q |
380 |
atctggaagataaaatcacaacaattactagtccaaatacacatgacactgatatctataccataaccatgtgacagatacttcgatgaaaatttatcag |
479 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
21732188 |
atctggacgataaaatcacaacaattactagtccaaatacacatgacactgatatctataccataaccatgtgacagatactttgatgaaaatttatcag |
21732089 |
T |
|
| Q |
480 |
aatcaagctc |
489 |
Q |
| |
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|||||||||| |
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| T |
21732088 |
aatcaagctc |
21732079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 205
Target Start/End: Complemental strand, 9988789 - 9988723
Alignment:
| Q |
139 |
acatggacaccggacatgacactggcacgtcgacaccggtaggaatttgaaaaaatgacataattga |
205 |
Q |
| |
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||||||||| | ||||||||| || |||||| |||| ||||| |||||| |||||||||||||||| |
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| T |
9988789 |
acatggacatcagacatgacattgacacgtccacacaggtagttatttgagaaaatgacataattga |
9988723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 203
Target Start/End: Original strand, 31084290 - 31084356
Alignment:
| Q |
137 |
agacatggacaccggacatgacactggcacgtcgacaccggtaggaatttgaaaaaatgacataatt |
203 |
Q |
| |
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|||||||||||||||||| ||||||| |||| |||||| | || ||||||||||||| |||||||| |
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| T |
31084290 |
agacatggacaccggacacgacactgacacgccgacacagctaataatttgaaaaaatcacataatt |
31084356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 31676904 - 31676861
Alignment:
| Q |
164 |
cacgtcgacaccggtaggaatttgaaaaaatgacataattgatt |
207 |
Q |
| |
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||||| ||||||||||| ||||||| |||||||||||||||||| |
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|
| T |
31676904 |
cacgttgacaccggtagtaatttgagaaaatgacataattgatt |
31676861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 2436895 - 2436955
Alignment:
| Q |
143 |
ggacaccggacatgacactggcacgtcgacaccggtaggaatttgaaaaaatgacataatt |
203 |
Q |
| |
|
|||||||||||| ||||||| |||| |||||||| || |||||| |||||| |||||||| |
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|
| T |
2436895 |
ggacaccggacacgacactgacacgccgacaccgctaataatttgcaaaaatcacataatt |
2436955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 5970199 - 5970134
Alignment:
| Q |
138 |
gacatggacaccggacatgacactggcacgtcgacaccggtaggaatttgaaaaaatgacataatt |
203 |
Q |
| |
|
|||| |||||||||||||||||| | ||||||||||| | || ||||||||||||| |||||||| |
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|
| T |
5970199 |
gacacggacaccggacatgacacggacacgtcgacacagttaataatttgaaaaaatcacataatt |
5970134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 205
Target Start/End: Original strand, 29910689 - 29910743
Alignment:
| Q |
151 |
gacatgacactggcacgtcgacaccggtaggaatttgaaaaaatgacataattga |
205 |
Q |
| |
|
|||||||||||| ||||| ||||||||| | ||||||| ||||||||| |||||| |
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|
| T |
29910689 |
gacatgacactgacacgtggacaccggtggaaatttgagaaaatgacagaattga |
29910743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 42720968 - 42720916
Alignment:
| Q |
151 |
gacatgacactggcacgtcgacaccggtaggaatttgaaaaaatgacataatt |
203 |
Q |
| |
|
|||||||||||| ||||| ||||||| || ||||||||||||| |||||||| |
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|
| T |
42720968 |
gacatgacactgacacgttgacaccgctaataatttgaaaaaatcacataatt |
42720916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 205
Target Start/End: Original strand, 38318713 - 38318771
Alignment:
| Q |
147 |
accggacatgacactggcacgtcgacaccggtaggaatttgaaaaaatgacataattga |
205 |
Q |
| |
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|||||| ||||||||| || || |||| |||||| ||||||||||||| |||||||||| |
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| T |
38318713 |
accggatatgacactgacaggttgacaacggtagtaatttgaaaaaataacataattga |
38318771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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