View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18352_low_7 (Length: 357)

Name: NF18352_low_7
Description: NF18352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18352_low_7
NF18352_low_7
[»] chr1 (1 HSPs)
chr1 (16-357)||(28376290-28376632)


Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 357
Target Start/End: Original strand, 28376290 - 28376632
Alignment:
Q  16 atgatgaaaataagga-actaaaattttaataa-tgtattnnnnnnnnnctcttttggattgtaaaattaaataagtcaagtatcccaaataaacagtgc 113  Q
    |||||||||||||||| |||||||||||||||| ||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28376290 atgatgaaaataaggagactaaaattttaataaatgtattaaaaaaaa-ctcttttggattgtaaaattaaataagtcaagtatcccaaataaacagtgc 28376388  T
Q  114 aaatatttgttggtgaagagaaaaagtagtaatannnnnnnnnnnggtcaaggtaggatttgtcttttacaatgataaatgagttgttgtaatgaccttt 213  Q
    ||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28376389 aaatatttgttggtgaagagaaaaagtagtaataattttttttttggtcaaggtaggatttgtcttttacaatgaaaaatgagttgttgtaatgaccttt 28376488  T
Q  214 cttttaggtaatgtaggtccttttgaacggcaaaccgtgaatttagcattgcacattcaagaatgtgtttaattatgcgccccacaagttaggaaactct 313  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28376489 cttttaggtagtgtaggtccttttgaacggcaaaccgtgaatttagcattgcacattcaagaatgtgtttaattatgcgccccacaagttaggaaactct 28376588  T
Q  314 aaattttcatggaagcttctcaagaatatgtcaagaatcatttt 357  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  28376589 aaattttcatggaagcttctcaagaacatgtcaagaatcatttt 28376632  T

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