View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18352_low_8 (Length: 350)
Name: NF18352_low_8
Description: NF18352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18352_low_8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 40648051 - 40648400
Alignment:
| Q |
1 |
agaatgtgttattaaaggaaaacaagtaaaaaagcaaaatcgacaaccaaaacagacaagcttgccaatctctgcctatccaccatcagaattaaacccc |
100 |
Q |
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| T |
40648051 |
agaatgtgttattaaaggaaaacaagtaaaaaagcaaaatcgacaaccaaaacagacaagcttgccaatctctgcctatccaccatcagaattaaacccc |
40648150 |
T |
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| Q |
101 |
tttgagtacccattggcaaagcaccatagacaggccaagtaaataaagttattttaagtttgtaaatccaaaataaaattgtaattgtccaaataaaatt |
200 |
Q |
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| T |
40648151 |
tttgagtacccattggcaaagcaccatagacaggccaagtaaataaagttattttaaatttgtaaatccaaaataaaattgtaattgtccaaataaaatt |
40648250 |
T |
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| Q |
201 |
gcccttattactacttaaacttctttattgcatgcgaaaatgtcccgtgcccaatgtacaaatccagctagcatattcaccaaatgatccaaaggactgc |
300 |
Q |
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| T |
40648251 |
gcccttattactactcaaacttctttattgcatgcgaaaatgtcccgtgcccaatggacaaatccagctagcatattcaccaaatgatccgaaggactgc |
40648350 |
T |
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| Q |
301 |
gtccaattggtgtaataatgtttcaaaatcataggtaaaaatacataaca |
350 |
Q |
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| T |
40648351 |
gtccaattggtgtaataatatttcaaaatcataggtaaaaatacataaca |
40648400 |
T |
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