View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18352_low_9 (Length: 340)
Name: NF18352_low_9
Description: NF18352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18352_low_9 |
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| [»] scaffold0016 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 325
Target Start/End: Original strand, 4065427 - 4065734
Alignment:
| Q |
18 |
tgtcttcagaaggtgaaacactcattttctcaacaaagtctgtgactgcttgaggctttccatctactaataattgtaaggtatgatagtataccttaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4065427 |
tgtcttcagaaggtgaaacactcattttctcaacaaagtctgtgactgcttgaggctttccatctactaataattgtaaggtatgatagtataccttaat |
4065526 |
T |
|
| Q |
118 |
ataccaaggcacaatttggaaaacattaacttgtaaattacacttctcttcaacattattggctgcaatgaagctcttggtcaattctgtagacttcaag |
217 |
Q |
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|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4065527 |
ataccaaggcacaatttggagaacattaacttgtaacttacacttctcttcaacattattggctgcaatgaagctcttggtcaattctgtagacttcaag |
4065626 |
T |
|
| Q |
218 |
gatattgcaatcgaacctctttcatttccacttcccattaaaaatctactggcatagaaaggtgcatgtgaggaggaccaaacaactggatacttccatg |
317 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4065627 |
gatattgcaatcgaacccctttcatttccacttcccattaaaaatctactggcatagaaaggtgcatgtgaggaggaccaaacaactggatacttccatg |
4065726 |
T |
|
| Q |
318 |
ttatgcct |
325 |
Q |
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|||||||| |
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| T |
4065727 |
ttatgcct |
4065734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 4060254 - 4060556
Alignment:
| Q |
18 |
tgtcttcagaaggtgaaacactcattttctcaacaaagtctgtgactgcttgaggctttccatctactaataattgtaaggtatgatagtataccttaat |
117 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
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| T |
4060254 |
tgtcttcagaaggcgaaacactcattttctcaacaaagtctgtgactgcttgaggcttttcatctactaataattgtaaggtatgataatataccttaat |
4060353 |
T |
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| Q |
118 |
ataccaaggcacaatttggaaaacattaacttgtaaattacacttctcttcaacattattggctgcaatgaagctcttggtcaattctgtagacttcaag |
217 |
Q |
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|||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||| |
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| T |
4060354 |
ataccaaggcacaatttgcagaacattaacttgtaacttacacttctcttcaacattattgactgcaatgaagtccttggtcaattctgtagatttcaag |
4060453 |
T |
|
| Q |
218 |
gatattgcaatcgaacctctttcatttccacttcccattaaaaatctactggcatagaaaggtgcatgtgaggaggaccaaacaactggatacttccatg |
317 |
Q |
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||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4060454 |
gatattgcaatcgaacccctttcgtttccactgcccattaaaaatctactggcatacaaaggtgcatgtgaggaggaccaaacaactggatacttccatg |
4060553 |
T |
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| Q |
318 |
tta |
320 |
Q |
| |
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||| |
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| T |
4060554 |
tta |
4060556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 56 - 249
Target Start/End: Original strand, 34506 - 34689
Alignment:
| Q |
56 |
tctgtgactgcttgaggctttccatctactaataattgtaaggtatgatagtataccttaatataccaaggcacaatttggaaaacattaacttgtaaat |
155 |
Q |
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|||| ||||| |||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||| | |
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| T |
34506 |
tctgagactgtttgaggattttcatctactaataattgtaaggtatgata----------atataccaaggcacaatttgcagaacattaacttgtaact |
34595 |
T |
|
| Q |
156 |
tacacttctcttcaacattattggctgcaatgaagctcttggtcaattctgtagacttcaaggatattgcaatcgaacctctttcatttccact |
249 |
Q |
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||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| |
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| T |
34596 |
tacacttctcttcaacattattggctgcaataaagtccttggtcaattctgtagatttcaaggatattgcaatcgaacccctttcgtttccact |
34689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 31325 - 31374
Alignment:
| Q |
139 |
aacattaacttgtaaattacacttctcttcaacattattggctgcaatga |
188 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
31325 |
aacattaacttgtaacttacacttctcttcaacattattggctgcaatga |
31374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 319
Target Start/End: Original strand, 34692 - 34746
Alignment:
| Q |
270 |
catagaaaggtgcatgtga-----ggaggaccaaacaactggatacttccatgtt |
319 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34692 |
catagaaaggtgcatgtgacgtgaggaggaccaaacaactggatacttccatgtt |
34746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 73 - 177
Target Start/End: Complemental strand, 21286393 - 21286289
Alignment:
| Q |
73 |
ctttccatctactaataattgtaaggtatgatagtataccttaatataccaaggcacaatttggaaaacattaacttgtaaattacacttctcttcaaca |
172 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| |
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| T |
21286393 |
cttttcatctactaataattgtaaggtatgataatataccttaatataccaaggcacaatttgcagaacattaacttgtaacttacacttctcttcaaca |
21286294 |
T |
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| Q |
173 |
ttatt |
177 |
Q |
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||||| |
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| T |
21286293 |
ttatt |
21286289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 73 - 231
Target Start/End: Original strand, 21242597 - 21242753
Alignment:
| Q |
73 |
ctttccatctactaataattgtaaggtatgatagtataccttaatataccaaggcacaatttggaaaacattaacttgtaaattacacttctcttcaaca |
172 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||||||| ||| | ||||||||||||||| |||||||||||||||||| |
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| T |
21242597 |
cttttcatctactaataattgtaaggtatgataatataccttaatataccaa-------ttttcagaacattaacttgtaacttacacttctcttcaaca |
21242689 |
T |
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| Q |
173 |
ttattgg-----ctgcaatgaagctcttggtcaattctgtagacttcaaggatattgcaatcga |
231 |
Q |
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||||||| ||||||| ||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
21242690 |
ttattggcttggctgcaatcaagtccttggtcaattctgtagatttcaaggatattgcaatcga |
21242753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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